Report for Sequence Feature Glyma06g21240
Feature Type: gene_model
Chromosome: Gm06
Start: 17756662
stop: 17757711
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g21240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06240 AT
Annotation by Michelle Graham. TAIR10: F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427
SoyBase E_val: 5.00E-26 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_G7K6D2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box n=1 Tax=Medicago truncatula RepID=G7K6D2_MEDTR
SoyBase E_val: 5.00E-58 ISS
UniRef100_I1KCW2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCW2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g21240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma06g21240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g197100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g21240
Coding sequences of Glyma06g21240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g21240.2 sequence type=CDS gene model=Glyma06g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAACAACTTCACTATCCCAGACGATATGATGGAAGAAATTCTGTTAAGATTACCGGTGAAATGTCTATTGCGTTTTAAATACGTATGTAAGTCATGGCTTTCTCTAATTTCCGATCCTCACTTTGCCAAATTCCATTATGACCTAGGAGCTGATCCCACCGACCAACTTCTTATAAAAAGCTATTGGGAAACTCATTCCAGAGACATAGAAGCATCACTTTACGATGATTCCACGAAAGCAGTCGTTAACATTCCATATCCATCACCATCTTACATTGATGAAGGCATTAAGTTTGAGGGTTCATGCAGAGGATTTCTACTCGTAACAACCACCGTCGTGTCTTCCGGCAAGGTTGTTTATTTCATGATATGGAATCCGTCAACGGGTCTTCGGAAACGATTTAACAAAGTGTTCCCCACGCTTGAATATCTACGTGGCATTGGGTATGACCCATCAACTGATGACTACGTGGTAGTGATGATAAGGTTAGGCCAGGAGGTACAATGTTTCTCCTTAAGGTCTAATTCATGGAGTCGCTTTGAGGGTACTCTTCCATTCCGGAAGAATACGTCTGTTACCCATACCCATGCTCTTTTAAATGGGTCATACTTGAATGGAGCTCTTCATTGGTTGGTTTACTCTTATGATTATTATTTCAAAATCATTGCATTTGATCTGGTGGAAAGGAAATTATTCGAGATTCCACTGCCACGTCAATTCGTAGAACATAGATGTTGTTTGATAGTAATGGGAGGATGTTTGTGTCTCTTTTGTACAACTTACGTGCCGGCTCAGCCGGCTCAGATGTGGATGATGAAAGAATACAATGTGCAGTCATCTTGGACCAGCACTAGTGTTCCTGATGCTCCTTATGGCTTTCATCCAATTTGCTTCACAAAAAATGGTGAAATTTTGGGATATGAGCACGGAGATAAAATGTTAATGAGACTTTCTGACAAAGGCAAGCTGCTTGACAAACGCAGAAGTTTATGTGAAAAATTTGTCCTGTATAAAGAGAGTTTGCTATCACTCCCTCCCAACTAA
Predicted protein sequences of Glyma06g21240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g21240.2 sequence type=predicted peptide gene model=Glyma06g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MENNFTIPDDMMEEILLRLPVKCLLRFKYVCKSWLSLISDPHFAKFHYDLGADPTDQLLIKSYWETHSRDIEASLYDDSTKAVVNIPYPSPSYIDEGIKFEGSCRGFLLVTTTVVSSGKVVYFMIWNPSTGLRKRFNKVFPTLEYLRGIGYDPSTDDYVVVMIRLGQEVQCFSLRSNSWSRFEGTLPFRKNTSVTHTHALLNGSYLNGALHWLVYSYDYYFKIIAFDLVERKLFEIPLPRQFVEHRCCLIVMGGCLCLFCTTYVPAQPAQMWMMKEYNVQSSWTSTSVPDAPYGFHPICFTKNGEILGYEHGDKMLMRLSDKGKLLDKRRSLCEKFVLYKESLLSLPPN*
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