Glyma06g12586 - SoyBase

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Report for Sequence Feature Glyma06g12586

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9755044
stop:	9756415
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12586

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77010	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr1:28942710-28944797 FORWARD LENGTH=695	SoyBase	E_val: 9.00E-123	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LC19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7LC19_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYZ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12586

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g12586 not represented in the dataset	Glyma06g12586 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12586

Paralog	Evidence	Comments
Glyma04g42220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12586 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g12586

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12586

Limit To All Plant Sequences

>Glyma06g12586.1   sequence type=CDS   gene model=Glyma06g12586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATTGCATGGCCTGGCACGATTGCTTCAATCCTGGTCTTCCATTCGTGAAGGGAGGCAACTCCACGTGGCATTCCTTATAACCGGCATCCTAAACTCCTCCGTCGCCGTGGCAAATCGGCTTCTCCAGCTATACTCACGCTGCGGCCATCTCCACGATGCGTCCCACTTGTTCGACGAAATGCCCCAAACAAACTCTTTCTCTTGGAACTCCCTCGTCCAAGCCCACCTCAACTCAGGACACACCCACAATGCCCTCCACTTGTTCAATGCCATGCCTCGCAACACCCACTTCTCGTGGAACATGGTCGTTTCCGCGTTTGCCAAGTCCGGACACGTCCTACTAGCCCACTCTCTCTTCAATGACATGCCCTCAAAGAACAACCTTGTCTGGAATTCCATAATTCACACGCTGTTCCTCTTCAAGAGCATGAACTCGGACCCTTCACAAGAAGTGCACCGTGATGCCTTTGTGCTGGCCACTTTTCTTGGCGCTTGTGCTGACTTGCTGGCTCTCGACTGTGGGAAGCAAGTCCATGCTCATGTTTTCGTTGATGGCATGGGGTTGGAGCTTGACAGGGTCTTGTGCAGCTCGCTGATTAACTTGTATGGGAAGTATGGTGATTTGGATAGTGCTGCTCGCGTTGAGAGTTTTGTGAGGGATGTGGACGAGTTCTCTTTGTCAGCTTTGATATCTGGTTATGCCAATGCCGGCAGAATGAGGGAGGCGAGAAGGGTTTTTGATAGTAAGGTTGATCCATGTTCTGTGCTATGGAATTCGATTATTTCAGGTTGTGTGTCCAATGGTGAGGAGATGGAAGCGGTGAATCTTTTCAGTGCAATGCTTAGGGATGGTGTTCGGGGAGATGCGTCTACTGTTGCTAATATTTTGAGTGTAGCCAGTGCTGGGGTGACTCATGATATAGTGGTTGCTAGTGCTCTGCTTGATGCCTACTCCAAATGTCAAAGCCCTTGTGAAGCTTGCAAGCTGTTTAGTGAGCTCAAAGATTATGATACCATTTTGCTTAATACTATGATCACTGTGTATTCTAATTGTGGAAGGATTGAAGATGCTAAGTTGATTTTTAGTAAAACCTTAATTTCATGGAATTCAATTCTAGTTGGCCTAACACAGAATGCATGTCTAAATGAAGCGTTGGATTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGGCAGCAAATCATCCCTTGAACTTGGTGAGCAGGTATTTGGTAATGCTATCACCATT

Predicted protein sequences of Glyma06g12586

Limit To All Plant Sequences

>Glyma06g12586.1   sequence type=predicted peptide   gene model=Glyma06g12586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLHGLARLLQSWSSIREGRQLHVAFLITGILNSSVAVANRLLQLYSRCGHLHDASHLFDEMPQTNSFSWNSLVQAHLNSGHTHNALHLFNAMPRNTHFSWNMVVSAFAKSGHVLLAHSLFNDMPSKNNLVWNSIIHTLFLFKSMNSDPSQEVHRDAFVLATFLGACADLLALDCGKQVHAHVFVDGMGLELDRVLCSSLINLYGKYGDLDSAARVESFVRDVDEFSLSALISGYANAGRMREARRVFDSKVDPCSVLWNSIISGCVSNGEEMEAVNLFSAMLRDGVRGDASTVANILSVASAGVTHDIVVASALLDAYSKCQSPCEACKLFSELKDYDTILLNTMITVYSNCGRIEDAKLIFSKTLISWNSILVGLTQNACLNEALDFSFASVISACGSKSSLELGEQVFGNAITI

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