Report for Sequence Feature Glyma05g38130
Feature Type: gene_model
Chromosome: Gm05
Start: 41535463
stop: 41536369
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g38130
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G11650 AT
Annotation by Michelle Graham. TAIR10: osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244
SoyBase E_val: 5.00E-106 ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0009816 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction
SoyBase N/A ISS
GO:0009817 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction
SoyBase N/A ISS
GO:0051707 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to other organism
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
PF00314 PFAM
Thaumatin family
JGI ISS
UniRef100_I1K6M9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6M9_SOYBN
SoyBase E_val: 1.00E-160 ISS
UniRef100_P25096 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein P21 n=1 Tax=Glycine max RepID=P21_SOYBN
SoyBase E_val: 9.00E-143 ISS
Expression Patterns of Glyma05g38130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma05g38130 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g204600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g38130
Coding sequences of Glyma05g38130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g38130.1 sequence type=CDS gene model=Glyma05g38130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCTCTCAGAAAAGCCGTGTTCTTTGTAATCGCTCAATGCTTCACCTTTTCCGCATATGCTGCAAGGTTTGAAATCACAAACCGATGCACATACACTGTCTGGGCTGCGTCTGTGCCTGTTGGCGGTGGCGTGCAATTAAACCCGGGCCAGTCATGGTCCGTGGACGTGCCTGCAGGAACGAAAGGGGCCCGCGTTTGGGCCCGAACCGGCTGCAACTTCGACGGTTCGGGCCGCGGTGGATGCCAGACCGGTGACTGCGGGGGTGTCCTCGACTGCAAAGCTTACGGTGCGCCTCCCAACACCCTGGCTGAATACGGCCTGAACGGGTTCAACAATTTGGACTTCTTCGACATCTCCCTCGTCGACGGTTTTAACGTGCCCATGGACTTTAGTCCAACCTCGAATGGATGCACACGTGGCATAAGCTGCACTGCGGACATTAACGGACAGTGCCCTAGTGAGCTAAAGACTCAAGGAGGTTGCAACAACCCTTGCACTGTCTTCAAAACCGACCAGTACTGTTGCAATTCCGGTAGCTGTGGGCCCACTGATTATTCCAGATTCTTCAAGCAAAGGTGCCCCGATGCTTATAGTTACCCCAAGGATGATCCAACTAGCACCTTCACTTGTAATGGTGGGACTGACTATAGGGTTGTCTTTTGTCCTTGA
Predicted protein sequences of Glyma05g38130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g38130.1 sequence type=predicted peptide gene model=Glyma05g38130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAALRKAVFFVIAQCFTFSAYAARFEITNRCTYTVWAASVPVGGGVQLNPGQSWSVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYGAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSPTSNGCTRGISCTADINGQCPSELKTQGGCNNPCTVFKTDQYCCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPTSTFTCNGGTDYRVVFCP*