Glyma05g34280 - SoyBase

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Report for Sequence Feature Glyma05g34280

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38655970
stop:	38659416
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30970	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type) family protein \| chr1:11040613-11043593 REVERSE LENGTH=367	SoyBase	E_val: 9.00E-153	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0051568	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG2893	KOG	Zn finger protein	JGI		ISS
PTHR23215	Panther	ZINC FINGER PROTEIN 207	JGI		ISS
UniRef100_G7LCD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7LCD1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5G9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5G9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34280

Paralog	Evidence	Comments
Glyma08g05390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g241800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34280

Limit To All Plant Sequences

>Glyma05g34280.1   sequence type=CDS   gene model=Glyma05g34280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGAAGAAGAGAGTTTCCTCGAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTTCACAAGGAATCCGTCACTAAGGTGCCCAATGCAAAGCCTGGTAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTTCGCGACCAGCCTTGCCCACGATGCCACCAGTTTATAATCCAGCTGTACCTGTGCCTCCAAATGCTTGGGTGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGTTGTTTCAGTTCCTCCTGCTGCCCCATACACACAGCAGCCATTATTCCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCAACTGCTCCTGCCCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCGCAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACTACTCAAAGTTCTGCATTTTCTGCTCCACCCCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTTCCTGTTGATACACATTTGAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGGCTGGTCGTATGGCATTTTAG

Predicted protein sequences of Glyma05g34280

Limit To All Plant Sequences

>Glyma05g34280.1   sequence type=predicted peptide   gene model=Glyma05g34280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMIPPPLGTGYPSRPALPTMPPVYNPAVPVPPNAWVVPPRPQPWFSQPPVVSVPPAAPYTQQPLFPVQNVRPPLPATAPALQTQITPPGLPTSAPVPVSQPLFPVVGNNHTTTQSSAFSAPPLPSSVPSVTPVMSTNVPVDTHLSSNSSVTSSYQAIGVPGGAASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF*

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