Glyma05g34030 - SoyBase

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Report for Sequence Feature Glyma05g34030

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38495325
stop:	38497529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18100	AT	Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein \| chr1:6228049-6230110 REVERSE LENGTH=173	SoyBase	E_val: 3.00E-97	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010030	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding	SoyBase	N/A	ISS
KOG3346	KOG	Phosphatidylethanolamine binding protein	JGI		ISS
PTHR11362	Panther	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	JGI		ISS
PF01161	PFAM	Phosphatidylethanolamine-binding protein	JGI		ISS
UniRef100_E3NYP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mother of flowering locus T-like protein n=2 Tax=Glycine max RepID=E3NYP7_SOYBN	SoyBase	E_val: 3.00E-136	ISS
UniRef100_E3NYP7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Mother of flowering locus T-like protein n=2 Tax=Glycine max RepID=E3NYP7_SOYBN	SoyBase	E_val: 3.00E-136	ISS

Expression Patterns of Glyma05g34030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g34030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g244100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34030

Limit To All Plant Sequences

>Glyma05g34030.2   sequence type=transcript   gene model=Glyma05g34030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTACTCTCTGCAAATCCACCAACGTGTCATCCATTGCATGTCCCTGATTTTACGATGGTCCATGCATGATCACAAAATTACAAAATAGAGGTCCCTGATATTTTACCCTTCAGTTTTTTTCTTTTCTTTTTGAGCTATATAAACCCTACCCTATACACTGTAAGCAACCACCAGAAACTCTCACTAGCTTAGTTTCTATATATGCGTTATTTGTCTCTGAGTACTTTTTCTCTCTTGTGCATTACCTTTGTGGTCATGGCAGCCTCCGTGGATCCCCTAGTGGTTGGTCGCGTGATCGGCGATGTGGTAGACATGTTCATTCCTTCAGTCAACATGTCCGTTTACTTTGGGTCGAAGCACGTCACAAATGGCTGTGACATCAAGCCATCCATTGCCATCAGCCCTCCTAAGCTCACCCTCACCGGCAACATGGATAACCTCTACACACTGGTTATGACTGATCCTGACGCACCTAGCCCCAGTGAACCAAGCATGCGCGAGTGGATACATTGGATCTTAGTTGACATACCTGGAGGAACAAACCCATTTCGCGGTAGTAAAAGAAATCTTTTGGTCTACTTCATATATGACATTTTTATTTTCTTCTATTTATAAAAGTTTCATGATGTTGCATGCATGAGTACTACTGGGTTCAGTTCTACTTAATTAATTTTTCTTTTCTTCGGGCTAAAACATCATGTTTTTTAATTTTTTGGGCGTCCATCGCACTGACTCTCGATTTCAGAAACATTTTTCTTCACTGGTCATAAAAATCTTAGGCCATTTCTGGCAAAATCAACATGCATGTTCCTACCTAGGCTCCTCGCATGCATGTTTCAGATTTCTTCTGGAAAAAAAAATCACAGAATTTCAGGGCTATGTCACATCTTGTGTGCACACTCTCTTTCTATACATCAAATGGTACTCTCACACCTGTGATCTACCAAAATTTGGATCCAATGTCCACCAT

Coding sequences of Glyma05g34030

Limit To All Plant Sequences

>Glyma05g34030.1   sequence type=CDS   gene model=Glyma05g34030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTTATTTGTCTCTGAGTACTTTTTCTCTCTTGTGCATTACCTTTGTGGTCATGGCAGCCTCCGTGGATCCCCTAGTGGTTGGTCGCGTGATCGGCGATGTGGTAGACATGTTCATTCCTTCAGTCAACATGTCCGTTTACTTTGGGTCGAAGCACGTCACAAATGGCTGTGACATCAAGCCATCCATTGCCATCAGCCCTCCTAAGCTCACCCTCACCGGCAACATGGATAACCTCTACACACTGGTTATGACTGATCCTGACGCACCTAGCCCCAGTGAACCAAGCATGCGCGAGTGGATACATTGGATCTTAGTTGACATACCTGGAGGAACAAACCCATTTCGCGGAAAAGAGATTGTTTCATATGTGGGACCAAGACCACCTATTGGAATACATCGCTATATCTTTGTGTTGTTTCAACAGAAAGGACCTTTAGGTCTTGTGGAGCAACCACCAACTCGAGCAAGCTTCAACACTCGTTATTTTGCCAGGCAATTGGACTTGGGACTTCCAGTGGCCACTGTCTACTTCAACTCTCAAAAAGAACCTGCTGTTAAGAGGCGCTGA

>Glyma05g34030.2   sequence type=CDS   gene model=Glyma05g34030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTTATTTGTCTCTGAGTACTTTTTCTCTCTTGTGCATTACCTTTGTGGTCATGGCAGCCTCCGTGGATCCCCTAGTGGTTGGTCGCGTGATCGGCGATGTGGTAGACATGTTCATTCCTTCAGTCAACATGTCCGTTTACTTTGGGTCGAAGCACGTCACAAATGGCTGTGACATCAAGCCATCCATTGCCATCAGCCCTCCTAAGCTCACCCTCACCGGCAACATGGATAACCTCTACACACTGGTTATGACTGATCCTGACGCACCTAGCCCCAGTGAACCAAGCATGCGCGAGTGGATACATTGGATCTTAGTTGACATACCTGGAGGAACAAACCCATTTCGCGGTAGTAAAAGAAATCTTTTGGTCTACTTCATATATGACATTTTTATTTTCTTCTATTTATAA

Predicted protein sequences of Glyma05g34030

Limit To All Plant Sequences

>Glyma05g34030.1   sequence type=predicted peptide   gene model=Glyma05g34030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYLSLSTFSLLCITFVVMAASVDPLVVGRVIGDVVDMFIPSVNMSVYFGSKHVTNGCDIKPSIAISPPKLTLTGNMDNLYTLVMTDPDAPSPSEPSMREWIHWILVDIPGGTNPFRGKEIVSYVGPRPPIGIHRYIFVLFQQKGPLGLVEQPPTRASFNTRYFARQLDLGLPVATVYFNSQKEPAVKRR*

>Glyma05g34030.2   sequence type=predicted peptide   gene model=Glyma05g34030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYLSLSTFSLLCITFVVMAASVDPLVVGRVIGDVVDMFIPSVNMSVYFGSKHVTNGCDIKPSIAISPPKLTLTGNMDNLYTLVMTDPDAPSPSEPSMREWIHWILVDIPGGTNPFRGSKRNLLVYFIYDIFIFFYL*

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