Glyma05g26710 - SoyBase

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Report for Sequence Feature Glyma05g26710

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32619202
stop:	32628046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01990	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:465197-466497 REVERSE LENGTH=213	SoyBase	E_val: 5.00E-65	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7J8M9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase n=1 Tax=Medicago truncatula RepID=G7J8M9_MEDTR	SoyBase	E_val: 4.00E-25	ISS
UniRef100_I1KRN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26710

Paralog	Evidence	Comments
Glyma08g09710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g136600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26710

Limit To All Plant Sequences

>Glyma05g26710.2   sequence type=transcript   gene model=Glyma05g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGCGTTGACTGACTCATACTATTACTATTACTACTGTTTCTTAAACTCATCCAATGCTTTTCTGTTTTCTTCCACAAATTGTACATAAATAGACCCTTCTCATCATTTTTTTGTTGCCACCAAGTCACACTATTACAAAATGAACCACCTTCATTCCCTAGCTTACACTACCACTACTAGCCTCTGTGGTTCTTCCCTAGGTTGGGATTATCACAACCTTGGAGTTCTCAACGTGGACAAAATGTCTTTAATGCCAGCTATGGAGGGAAGTACTACACCATCACTCTCATCACCTCAACACTCTGATTTCTCAACTGGGTATCTCGAAGATGCTTTGATTGAATCATGTGAGCGTTCAAAACGTAGACGTGTGTTGCCATGTGCTACTGATGAACATAGCAAGAGTTTCATTGATGACCTTGAGCAGAGTTTCTGGAATTTCAACCCCTTATGGAACCAACCAGTAGAGAACTTCAACTTCTACTGCATGAACCAGATAGAAAGGTTTTGTGGAATTTCAGATGAGCATATAAGCACATCAAGGAGCGAGGAAGCAAACATTCTTCTAGCAGACACTAAAACACCGGAAGAGACAATATCAGCCTCTGAATCTTTAAATTCATCCTCATCTTCATACAAACAACCGGCGACATGCAAAACCACAGACCCCACAGTTGCCCCAACAGAAAATGATGATATGAGGAACAAGAAGGTGGTAACAAGAGTGGTGTATCCATTTGCAATGGTGAAGCCAGGAGGAAGAGAAGGTGATGTGACATTGAATGACATAAATGAGAGGATCCTAATGCCTCCCACAAGACCAGTGAGGCATCCAGTTGGAGACTTTGCATGTCGGCCATGCGTGTCCGCAGAGGGTCCAGGGCTTTCAGGGAAAGCAGTGGTGGCCCTTACTAGAATTCACACACAGGGAAGAGGCACAATCACTATTATCAGAACCAAAGGCTAAGCAATAACATCGAGCAGTGTTATGTGTTATGCCCCTTATTGCTGTGGCTTGGTTAGCACCTACCTAGCTTTTACTTGAAGCAGCTTTTTGGGCCTGATTTGCTTTGTTTTCATCAGTCCTTCTTCCAATTGTAAAGATGGAAAGCGATATCTATGTATGTGCATACACCTTATATAATACTTGAACCTTATGTTAAAGCTGTTCTTCTCAGAGATTCAGACCCAACATGAACAATTATTTGATTTGAGTGTTGTCCTGGTAAGCTAGTAGCCAATGATATATAATACTAATATTCAAAAGAAATATAAAAAAAGAATGTACAAGAGAAGGAAGGGGGGGAGGAAAAAAACAAATAAACATACAAAAGATTATTGCACAATGGAATTAAGGTCTTTTGCCACTGGTTAGGACTTTTGATCTTTGAGAAAGACACAGCAG

Coding sequences of Glyma05g26710

Limit To All Plant Sequences

>Glyma05g26710.1   sequence type=CDS   gene model=Glyma05g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGAAGTACTACACCATCACTCTCATCACCTCAACACTCTGATTTCTCAACTGGGTATCTCGAAGATGCTTTGATTGAATCATGTGAGCGTTCAAAACGTAGACGTGTGTTGCCATGTGCTACTGATGAACATAGCAAGAGTTTCATTGATGACCTTGAGCAGAGTTTCTGGAATTTCAACCCCTTATGGAACCAACCAGTAGAGAACTTCAACTTCTACTGCATGAACCAGATAGAAAGGTTTTGTGGAATTTCAGATGAGCATATAAGCACATCAAGGAGCGAGGAAGCAAACATTCTTCTAGCAGACACTAAAACACCGGAAGAGACAATATCAGCCTCTGAATCTTTAAATTCATCCTCATCTTCATACAAACAACCGGCGACATGCAAAACCACAGACCCCACAGTTGCCCCAACAGAAAATGATGATATGAGGAACAAGAAGGTGGTAACAAGAGTGGTGTATCCATTTGCAATGGTGAAGCCAGGAGGAAGAGAAGGTGATGTGACATTGAATGACATAAATGAGAGGATCCTAATGCCTCCCACAAGACCAGTGAGGCATCCAGTTGGAGACTTTGCATGTCGGCCATGCGTGTCCGCAGAGGGTCCAGGGCTTTCAGGGAAAGCAGTGGTGGCCCTTACTAGAATTCACACACAGGGAAGAGGCACAATCACTATTATCAGAACCAAAGGCTAA

>Glyma05g26710.2   sequence type=CDS   gene model=Glyma05g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCACCTTCATTCCCTAGCTTACACTACCACTACTAGCCTCTGTGGTTCTTCCCTAGGTTGGGATTATCACAACCTTGGAGTTCTCAACGTGGACAAAATGTCTTTAATGCCAGCTATGGAGGGAAGTACTACACCATCACTCTCATCACCTCAACACTCTGATTTCTCAACTGGGTATCTCGAAGATGCTTTGATTGAATCATGTGAGCGTTCAAAACGTAGACGTGTGTTGCCATGTGCTACTGATGAACATAGCAAGAGTTTCATTGATGACCTTGAGCAGAGTTTCTGGAATTTCAACCCCTTATGGAACCAACCAGTAGAGAACTTCAACTTCTACTGCATGAACCAGATAGAAAGGTTTTGTGGAATTTCAGATGAGCATATAAGCACATCAAGGAGCGAGGAAGCAAACATTCTTCTAGCAGACACTAAAACACCGGAAGAGACAATATCAGCCTCTGAATCTTTAAATTCATCCTCATCTTCATACAAACAACCGGCGACATGCAAAACCACAGACCCCACAGTTGCCCCAACAGAAAATGATGATATGAGGAACAAGAAGGTGGTAACAAGAGTGGTGTATCCATTTGCAATGGTGAAGCCAGGAGGAAGAGAAGGTGATGTGACATTGAATGACATAAATGAGAGGATCCTAATGCCTCCCACAAGACCAGTGAGGCATCCAGTTGGAGACTTTGCATGTCGGCCATGCGTGTCCGCAGAGGGTCCAGGGCTTTCAGGGAAAGCAGTGGTGGCCCTTACTAGAATTCACACACAGGGAAGAGGCACAATCACTATTATCAGAACCAAAGGCTAA

Predicted protein sequences of Glyma05g26710

Limit To All Plant Sequences

>Glyma05g26710.1   sequence type=predicted peptide   gene model=Glyma05g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSTTPSLSSPQHSDFSTGYLEDALIESCERSKRRRVLPCATDEHSKSFIDDLEQSFWNFNPLWNQPVENFNFYCMNQIERFCGISDEHISTSRSEEANILLADTKTPEETISASESLNSSSSSYKQPATCKTTDPTVAPTENDDMRNKKVVTRVVYPFAMVKPGGREGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAEGPGLSGKAVVALTRIHTQGRGTITIIRTKG*

>Glyma05g26710.2   sequence type=predicted peptide   gene model=Glyma05g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNHLHSLAYTTTTSLCGSSLGWDYHNLGVLNVDKMSLMPAMEGSTTPSLSSPQHSDFSTGYLEDALIESCERSKRRRVLPCATDEHSKSFIDDLEQSFWNFNPLWNQPVENFNFYCMNQIERFCGISDEHISTSRSEEANILLADTKTPEETISASESLNSSSSSYKQPATCKTTDPTVAPTENDDMRNKKVVTRVVYPFAMVKPGGREGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAEGPGLSGKAVVALTRIHTQGRGTITIIRTKG*

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