Report for Sequence Feature Glyma05g21880
Feature Type: gene_model
Chromosome: Gm05
Start: 26735687
stop: 26753742
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g21880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37460 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17608623-17615534 REVERSE LENGTH=1052
SoyBase E_val: 0 ISS
GO:0006346 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006396 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA processing
SoyBase N/A ISS
GO:0009816 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction
SoyBase N/A ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0016246 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA interference
SoyBase N/A ISS
GO:0022402 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell cycle process
SoyBase N/A ISS
GO:0031348 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0043687 GO-bp
Annotation by Michelle Graham. GO Biological Process: post-translational protein modification
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0043231 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle
SoyBase N/A ISS
GO:0048471 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: perinuclear region of cytoplasm
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0032947 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein complex scaffold
SoyBase N/A ISS
KOG0548
KOG
Molecular co-chaperone STI1
JGI ISS
PTHR23083 Panther
O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT
JGI ISS
PTHR23083:SF2 Panther
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
JGI ISS
PF00515 PFAM
Tetratricopeptide repeat
JGI ISS
UniRef100_G7K3X6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7K3X6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K2A6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2A6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g21880
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g21880
Paralog Evidence Comments
Glyma17g17920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g21880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g102400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g21880
Coding sequences of Glyma05g21880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g21880.1 sequence type=CDS gene model=Glyma05g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCTCCTCCTCCTCCTCCTGCTGCTGCTGCTACCTCCGAGCGGGTGGACTTGGCCAGGCTCTGCGCCTCCAAGGACTGGTCCAAAGCCATTCGAGTCCTCGATTCCCTCATTTCTCATTCCAACGCAATTCAAGACCTATGCAACCGCGCCTTCTGTTACAGCAAATTAGAGCTCCACAAGCACGTGATTAGGGATTGCGACCGAGCGCTTCAGCTTGACCCTACGCGTCTTCAAGCTTATATTCTCAAAGGTTCTGCACTGTCTGTGTTGGGAAGGCAAGAAAATGCTCTATTGGTATGGGAGCAGGGCTATGAACATGCTCTGCATCAGTCTGCTGACTTGAAACAGCTGCTAGAACTTGAAGAGCTTATAGAGACAGCAAAACAAGGCAAAAATACACTGTGTGAAAGTGAAAACCATAGGCCACCGCCACAAACCAAATCAGATTCTCTGAGTAATGGGAGCTCTAGTGAAACTCTTAAGATCCAAGATACATTGGGCACTCCGGCTGAATTATGTGGTGATGCTACTGGTGATAAATCTGAGACATGCCTAAATTCTGCTGATAATTCCGACTTAAAGCATGAATCACATGATGAAGATAGAGACTCTAATAAATCTGATGGCCAAGTGAATGGAAGCCCTGATGTTCTTGATATACTTAGTTACAATTCTGAATCATGTAATGACTCCAGTGATGCCTCAGAATCAAGCGAAAAAGTATCTACCAATAGTGGTGACTCATCTAATATCCCTGAAATTTTTAGAAACCCTATTAGTAAGTTTATATTTTCTGATGAAAGAAAAGGTGAAGCAAGGAAAAATAAGAAGTTCTGCATTGCTCAGATTTCAAATACTAATTCCATTAGTGTAGATTTTCGACTCTCGAGGGGTATAGCAGAGGTTAATGAAGGAAAATATGCTCATGCCATATCCATTTTTGACCAGATACTGAAAAAGGACCCAGCTTATCCTGAAGCACTAATAGGAAGAGGTACAGCATATGCATTCCAGAGGGAACTTGATGCTGCTATAGCTGATTTTACAAAGGCTATACAATTTAATCCATTGGCTGGTGAGGCATGGAAACGGAGAGGTCAGGCCAGGGCAGCCTTGGGAGAGTTTGTTGAGGCTATTGAAGACTTGACCAAGGCATTAGAGTTTGAACCTGACACAGCAGATATTTTACATGAGAGAGGAATTGTCAATTTCAAATTTAAAGAGTTTGATGCAGCTGTTGAAGACCTTTCAGCTTGCGTGAAGCTAGATAAGGATAATACATCTGCCTACACATATTTGGGTTTAGCATTATCTTCAATTGGTGAATATAAGAAAGCTGAGGAAGCTCATCTCAAATCACTTCAACTTGACAAAAATTTCCTTGAAGCATGGGCACATCTGACTCAGTTCTATCAAGATTTAGCTAAGCCAACAAAGGCTCAGGAATGTATAAATAAGATGCTACAAATTGATGGGAGGTTTGCAAGAGCTAATCATTTGCGTGGCCTTCTGTTCCATGCAATGGGTGAGCACAGGAAGGCTATCAAGGATTTGACAATGGGGTTGAGCATTGATGGCAGCAACATTGAATGCTTGTATTTACGTGCTTCCTGCTACCATGCTGTTGGACAATACAAAGAAGCGGTCAAGGATTATGATGCTGCATTGGATTTGGAGCTGGATTCAATGGACAAATTCGTGCTCCAGTGCCTTGCTTTTTATCAGAAAGAGATTGCTCTGTACACAGCTTCAAAATTTAATGGTGATTTTTGCTGGTTTGATATTGATGGGGATATTGATGCTCTTTTTAAGGAATACTGGTGCAAGAAATTGCATCCAAAGAATGTATGCGAAAAGGTTTTCAGGCAACCTCCTTTACGCGAGTCTTTAAGAAAGGGAAAGCTTAAAAAGCAAGAGTTTACTATTACCAAGCAGAAGGCTTCTCTTCTACAGGCTTCAGATTCCATTGGCATGAAAATCCAGTATGATTGTCCAGGATTCCTACCTAATAGACGTCAGCATCGTATGGCTGGACTTGCTGCCATTGAAATTGCACAAAAAGTCTCTAAGGCTTGGCGTTCCCTGCATGCTGAATGGAAATATTCGAATAAAGGAAACTCAAAGAATGGGAGAAGGGCCAGGAGAAGGGAAAGAATTAATATGCCCAGTCAAAATAGAGGAGGAGCTGGTTGTAGTACAAGCAGTACCTCAGTAACATCTTCAAATGGAACTGTAGATGATAGATTATCCAGCCGTACATTGTCGTGGCACAATGTTTACTCATTAGCTGTTAGATGGAGACAAATTTCTGAGCCTTGTGACCCTGTTGTATGGGTGAACAAGCTAAGTGATGAGTTTAATGCTGGATTTGGTTCTCACACACCTATGATTCTTGGGCAAGCCAAAGTTGTTCGTTACTTTCCTAATTATGAAAGAACATTAGAAATTGCCAAGACTGTAATGAAAGAGAGATCATTTGTCCACAGCAAAACAGACAAGATCATTCATCTTTCCAAAGATGGGAAATTAGAAGAGATTATGCATGCAAAATTATGCTCTGATCTTTATAAAGTTGTTGGTGAGGATTTTTGGTTGGCTACCTGGTGCAACAGTACTGCATTTGAAGGGAAGCAGCTTGAAGGAACTAGGATAAACCTTGTAAAAATGGGGGAGCATGGTTTTGACTTTGCAATCAAAACACCTTGTACCCCTGCTAGATGGGAAGATTTTGACGAAGAAATGGCAGTGGCATGGGAAACTCTCTGCAATGCTTACTGTGGTGAAAACTATGGGTCTACTGACTTTGACACGCTTGAAAACGTGCTAGATGCAATTTTAAGGATGACATATTACTGGTATAACTTTATGCCACTGTCTAGGGGATCTGCTGTGGTTGGATTTATAGTTATGCTGGGTTTGTTACTTGCTGCCAACATGGAGTTCACAGGAAGCATCCCACAGGGTTTTCAGGTTGACTGGGAAGCCATTTTGAACTTGGATCCAAACTCGTTCGTGGATTCGGTTAAAACGTGGCTGTACCCATCTCTGAAGGTGACAACCTCATGGAAAGACTACCCTGATATTGCTTCAACTTTTGCAACAACAGGGTCAGTTATTTCTGCTTTGAACTTTTCTTCTGATGATTGA
Predicted protein sequences of Glyma05g21880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g21880.1 sequence type=predicted peptide gene model=Glyma05g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPPPPPPAAAATSERVDLARLCASKDWSKAIRVLDSLISHSNAIQDLCNRAFCYSKLELHKHVIRDCDRALQLDPTRLQAYILKGSALSVLGRQENALLVWEQGYEHALHQSADLKQLLELEELIETAKQGKNTLCESENHRPPPQTKSDSLSNGSSSETLKIQDTLGTPAELCGDATGDKSETCLNSADNSDLKHESHDEDRDSNKSDGQVNGSPDVLDILSYNSESCNDSSDASESSEKVSTNSGDSSNIPEIFRNPISKFIFSDERKGEARKNKKFCIAQISNTNSISVDFRLSRGIAEVNEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLAGEAWKRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSACVKLDKDNTSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPTKAQECINKMLQIDGRFARANHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASCYHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEIALYTASKFNGDFCWFDIDGDIDALFKEYWCKKLHPKNVCEKVFRQPPLRESLRKGKLKKQEFTITKQKASLLQASDSIGMKIQYDCPGFLPNRRQHRMAGLAAIEIAQKVSKAWRSLHAEWKYSNKGNSKNGRRARRRERINMPSQNRGGAGCSTSSTSVTSSNGTVDDRLSSRTLSWHNVYSLAVRWRQISEPCDPVVWVNKLSDEFNAGFGSHTPMILGQAKVVRYFPNYERTLEIAKTVMKERSFVHSKTDKIIHLSKDGKLEEIMHAKLCSDLYKVVGEDFWLATWCNSTAFEGKQLEGTRINLVKMGEHGFDFAIKTPCTPARWEDFDEEMAVAWETLCNAYCGENYGSTDFDTLENVLDAILRMTYYWYNFMPLSRGSAVVGFIVMLGLLLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKTWLYPSLKVTTSWKDYPDIASTFATTGSVISALNFSSDD*
SoyBase
Follow us on Twitter @SoyBaseDatabase
