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Report for Sequence Feature Glyma05g21790

Feature Type:gene_model
Chromosome:Gm05
Start:26667366
stop:26670957
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48385AT Annotation by Michelle Graham. TAIR10: FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558 SoyBaseE_val: 4.00E-107ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07899PFAM Frigida-like protein JGI ISS
UniRef100_B9SG32UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein FRIGIDA, putative n=1 Tax=Ricinus communis RepID=B9SG32_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233A3E4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A3E4 related cluster n=1 Tax=unknown RepID=UPI000233A3E4 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g18000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g101800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g21790.2   sequence type=transcript   gene model=Glyma05g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGATAAAATATTCCACTATAGAATCCCATTTGTTTCCCTATCCGTGCTTTCCTTCATCTTCTTGGCCTGTTTCTTTTATCCCTCTTCTCCAACAAGTACCGCACAGGGTAAGTATTTTAATCTCTGATTGGAACCGTGCCTAATCTCCTCAACTTCCAACCTTCGACCTAGGACACTCCGAAATTTCAAATTGGGGTTTAAACAAAAGCTTCGGCAAAACTCTGCTGGGTTGGCATTAAGAGCTTCTCGCGTCAGAAATAACTAAGGCTGTGTGAATATGGGTGTCGAGGAGCAAGGCGAGGAAATTAATGTACAGTCTATGATAGAGCAGCTCTCTCAGGCATTTCTTGAATTGGAAGCTCAGAAGGGGGAGACTGAGAATAAGATTCAGTGGGTTGAAATTAAGCAACATTTCCATGACCTTGAGACGGAGTTGAATAAGAAACTTGAAGAGCTGGAAGCTAAGGAGAGGGAGTACGAAGCGAAACAAGTAGAAGTGGATACACTACTCGCAGAAAGGAAGACTGTGATTGCTTCTAAAGAGCAAGACCTCTTAGATCGGTTGCAGGAGCTTAAAGATGCTGCTGTAGCTTCCATTGTAGAGGCTCATGCAAATCACCGGAATGCCACTCTGGAGTCTGTGTATGATGGGGAGAACAAAGATAACAAGGGCATGCGCAAATCCTGTATTATAATTTTGGAAGCCATGGCCACCTTATTGGCAAGGGCTGATCCAGGTGCAGATCACCTTCTGAACCCTCAAACCAAGCAGCATGCCAAAGCAATTGCTGATGAGTGGAGGCCCAACTTAGCTAGAGCAGATACTGATGCTGCCAATGGAAATTCATTGGAAGCAAAGGCATTCTTCCAGCTTATTTCAACTTTTAAGATTGCTTCAGAGTTTGATGAAGAAGAACTCTGCAAGCTTGTACTTGCAGTTGCTCAGCTTAGGCAGGCACCTGAGCTCTGCTGCTCTATTGGGTTAATTCACAAAATGCCAGCTGTTGTAGAATCATTAATCAATACTGGGAAACAAATAGCAGCTGTACATTTTATTCATGCCTTCCAGCTCCAAGAAAGCTTCCCCCCAGTGCCCCTTCTGAAGGCATACCTCAAGAATCGAAGGAGAAATTCACAAGTTAAGACTGGAAATGTGCGTGACATCACTAGTGCAAAGAATGATGCCAATGCACAAGAGCTTGCAGCACTGAGAGCTGTAATTAAGTGTATTGAAGAATACAAGCTTGAATCTGACTACCCTCCTGATACACTTCGGAAAAGGGTTCTTCAACTAGAGAAATCAAAGGGAGATAGAAAGAGAAGTGGAGAATTTATTAAACGCCCTCAATCAAAGAGGCCAAGGCCGAATGAGAGACGTTTTTCACTCCATTCATCTGGTGGTAGCGTTGCTTCAACTGTTGTTTTGGGTAGGCAGGTTCCCCCTGTTAGGGCACCATATGCAGCAAATCCTGATAGGTATCCCCATGATGGCACAATCACATATGATTATCAAGTTCCTGGTCAATCTATATACACTGCAGCATCTAATGCTCCTCCTTCTAACTATGGTCGTTATATGGGTACTAGTACTAGTTTGCAATCCTCACACCAACCATACTTGTGAGTTTTTTTTCCATCCAATCATTAGTGGAAAGACTACAGACTTGAGAAGGATCAACTCATTAGTATATGCTTGGTTTTCCATTGAGAATTTTAGATAGAACCTCGTGTATGTTTGTCAGAAAGCTACTAGTTACTTTTTGTTCGCATGCTCAGGAATTTGTGTTAATGGAAAATCAAACTGTTTTTGTTTTTGTATGAGCTTCTTATGATGCCAAAGGGCAGATGTACTCTTACATTTTCATCCAATGGTAACTTGTGTTAAATCAAGTGCATATGACATAGTCATCTTGGGGGTAAAGTTTTGGAGAATTATATCAAGGTATGAAGATTTCCCAAAATCTAATGTCCGTTGTATTGAGAAAAAATAATTTTTTCTCAACCTACTTTTGGTTGGCC

>Glyma05g21790.1   sequence type=CDS   gene model=Glyma05g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCGAGGAGCAAGGCGAGGAAATTAATGTACAGTCTATGATAGAGCAGCTCTCTCAGGCATTTCTTGAATTGGAAGCTCAGAAGGGGGAGACTGAGAATAAGATTCAGTGGGTTGAAATTAAGCAACATTTCCATGACCTTGAGACGGAGTTGAATAAGAAACTTGAAGAGCTGGAAGCTAAGGAGAGGGAGTACGAAGCGAAACAAGTAGAAGTGGATACACTACTCGCAGAAAGGAAGACTGTGATTGCTTCTAAAGAGCAAGACCTCTTAGATCGGTTGCAGGAGCTTAAAGATGCTGCTGTAGCTTCCATTGTAGAGGCTCATGCAAATCACCGGAATGCCACTCTGGAGTCTGTGTATGATGGGGAGAACAAAGATAACAAGGTAAGCAACTCTCTTGGCGATACAAATTCCTCAGAGGACGATTTTCCTCATAAGTCAGATGAAAAGTCTAAAGGTGTGGCTGTTGAGGGTAGGCCACGTCCAGAGCTGACACAATTTTGTGAGCAAATGGATGCAAAAGGTCTTCTGAATTATATTGTGGAGAATAAAAAAAAAAAATCTGTTAATCGTGAAGAAATTTCTGTTGCATTACAAAGTGCAACTGATCCAGCATGTTTGGTGCTGGATTTACTGGAGGGGTTTTACCCCACCAATGAAACTTCCCAACTAAAAGATAAATCTGGTGCTTCCCTACAGGGCATGCGCAAATCCTGTATTATAATTTTGGAAGCCATGGCCACCTTATTGGCAAGGGCTGATCCAGGTGCAGATCACCTTCTGAACCCTCAAACCAAGCAGCATGCCAAAGCAATTGCTGATGAGTGGAGGCCCAACTTAGCTAGAGCAGATACTGATGCTGCCAATGGAAATTCATTGGAAGCAAAGGCATTCTTCCAGCTTATTTCAACTTTTAAGATTGCTTCAGAGTTTGATGAAGAAGAACTCTGCAAGCTTGTACTTGCAGTTGCTCAGCTTAGGCAGGCACCTGAGCTCTGCTGCTCTATTGGGTTAATTCACAAAATGCCAGCTGTTGTAGAATCATTAATCAATACTGGGAAACAAATAGCAGCTGTACATTTTATTCATGCCTTCCAGCTCCAAGAAAGCTTCCCCCCAGTGCCCCTTCTGAAGGCATACCTCAAGAATCGAAGGAGAAATTCACAAGTTAAGACTGGAAATGTGCGTGACATCACTAGTGCAAAGAATGATGCCAATGCACAAGAGCTTGCAGCACTGAGAGCTGTAATTAAGTGTATTGAAGAATACAAGCTTGAATCTGACTACCCTCCTGATACACTTCGGAAAAGGGTTCTTCAACTAGAGAAATCAAAGGGAGATAGAAAGAGAAGTGGAGAATTTATTAAACGCCCTCAATCAAAGAGGCCAAGGCCGAATGAGAGACGTTTTTCACTCCATTCATCTGGTGGTAGCGTTGCTTCAACTGTTGTTTTGGGTAGGCAGGTTCCCCCTGTTAGGGCACCATATGCAGCAAATCCTGATAGGTATCCCCATGATGGCACAATCACATATGATTATCAAGTTCCTGGTCAATCTATATACACTGCAGCATCTAATGCTCCTCCTTCTAACTATGGTCGTTATATGGGTACTAGTACTAGTTTGCAATCCTCACACCAACCATACTTGTGA

>Glyma05g21790.2   sequence type=CDS   gene model=Glyma05g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCGAGGAGCAAGGCGAGGAAATTAATGTACAGTCTATGATAGAGCAGCTCTCTCAGGCATTTCTTGAATTGGAAGCTCAGAAGGGGGAGACTGAGAATAAGATTCAGTGGGTTGAAATTAAGCAACATTTCCATGACCTTGAGACGGAGTTGAATAAGAAACTTGAAGAGCTGGAAGCTAAGGAGAGGGAGTACGAAGCGAAACAAGTAGAAGTGGATACACTACTCGCAGAAAGGAAGACTGTGATTGCTTCTAAAGAGCAAGACCTCTTAGATCGGTTGCAGGAGCTTAAAGATGCTGCTGTAGCTTCCATTGTAGAGGCTCATGCAAATCACCGGAATGCCACTCTGGAGTCTGTGTATGATGGGGAGAACAAAGATAACAAGGGCATGCGCAAATCCTGTATTATAATTTTGGAAGCCATGGCCACCTTATTGGCAAGGGCTGATCCAGGTGCAGATCACCTTCTGAACCCTCAAACCAAGCAGCATGCCAAAGCAATTGCTGATGAGTGGAGGCCCAACTTAGCTAGAGCAGATACTGATGCTGCCAATGGAAATTCATTGGAAGCAAAGGCATTCTTCCAGCTTATTTCAACTTTTAAGATTGCTTCAGAGTTTGATGAAGAAGAACTCTGCAAGCTTGTACTTGCAGTTGCTCAGCTTAGGCAGGCACCTGAGCTCTGCTGCTCTATTGGGTTAATTCACAAAATGCCAGCTGTTGTAGAATCATTAATCAATACTGGGAAACAAATAGCAGCTGTACATTTTATTCATGCCTTCCAGCTCCAAGAAAGCTTCCCCCCAGTGCCCCTTCTGAAGGCATACCTCAAGAATCGAAGGAGAAATTCACAAGTTAAGACTGGAAATGTGCGTGACATCACTAGTGCAAAGAATGATGCCAATGCACAAGAGCTTGCAGCACTGAGAGCTGTAATTAAGTGTATTGAAGAATACAAGCTTGAATCTGACTACCCTCCTGATACACTTCGGAAAAGGGTTCTTCAACTAGAGAAATCAAAGGGAGATAGAAAGAGAAGTGGAGAATTTATTAAACGCCCTCAATCAAAGAGGCCAAGGCCGAATGAGAGACGTTTTTCACTCCATTCATCTGGTGGTAGCGTTGCTTCAACTGTTGTTTTGGGTAGGCAGGTTCCCCCTGTTAGGGCACCATATGCAGCAAATCCTGATAGGTATCCCCATGATGGCACAATCACATATGATTATCAAGTTCCTGGTCAATCTATATACACTGCAGCATCTAATGCTCCTCCTTCTAACTATGGTCGTTATATGGGTACTAGTACTAGTTTGCAATCCTCACACCAACCATACTTGTGA

>Glyma05g21790.1   sequence type=predicted peptide   gene model=Glyma05g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEEQGEEINVQSMIEQLSQAFLELEAQKGETENKIQWVEIKQHFHDLETELNKKLEELEAKEREYEAKQVEVDTLLAERKTVIASKEQDLLDRLQELKDAAVASIVEAHANHRNATLESVYDGENKDNKVSNSLGDTNSSEDDFPHKSDEKSKGVAVEGRPRPELTQFCEQMDAKGLLNYIVENKKKKSVNREEISVALQSATDPACLVLDLLEGFYPTNETSQLKDKSGASLQGMRKSCIIILEAMATLLARADPGADHLLNPQTKQHAKAIADEWRPNLARADTDAANGNSLEAKAFFQLISTFKIASEFDEEELCKLVLAVAQLRQAPELCCSIGLIHKMPAVVESLINTGKQIAAVHFIHAFQLQESFPPVPLLKAYLKNRRRNSQVKTGNVRDITSAKNDANAQELAALRAVIKCIEEYKLESDYPPDTLRKRVLQLEKSKGDRKRSGEFIKRPQSKRPRPNERRFSLHSSGGSVASTVVLGRQVPPVRAPYAANPDRYPHDGTITYDYQVPGQSIYTAASNAPPSNYGRYMGTSTSLQSSHQPYL*

>Glyma05g21790.2   sequence type=predicted peptide   gene model=Glyma05g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEEQGEEINVQSMIEQLSQAFLELEAQKGETENKIQWVEIKQHFHDLETELNKKLEELEAKEREYEAKQVEVDTLLAERKTVIASKEQDLLDRLQELKDAAVASIVEAHANHRNATLESVYDGENKDNKGMRKSCIIILEAMATLLARADPGADHLLNPQTKQHAKAIADEWRPNLARADTDAANGNSLEAKAFFQLISTFKIASEFDEEELCKLVLAVAQLRQAPELCCSIGLIHKMPAVVESLINTGKQIAAVHFIHAFQLQESFPPVPLLKAYLKNRRRNSQVKTGNVRDITSAKNDANAQELAALRAVIKCIEEYKLESDYPPDTLRKRVLQLEKSKGDRKRSGEFIKRPQSKRPRPNERRFSLHSSGGSVASTVVLGRQVPPVRAPYAANPDRYPHDGTITYDYQVPGQSIYTAASNAPPSNYGRYMGTSTSLQSSHQPYL*







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