Glyma05g08200 - SoyBase

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Report for Sequence Feature Glyma05g08200

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8166830
stop:	8173357
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15610	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:5291076-5292796 REVERSE LENGTH=341	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0278	KOG	Serine/threonine kinase receptor-associated protein	JGI		ISS
PTHR19877	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9STP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine kinase receptor-associated protein, putative n=1 Tax=Ricinus communis RepID=B9STP9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K1C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1C9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g08200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08200

Paralog	Evidence	Comments
Glyma17g12770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g010900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g08200

Limit To All Plant Sequences

>Glyma05g08200.1   sequence type=CDS   gene model=Glyma05g08200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGAAAAAGGTGGCAGTTCCCCTCGTGTGCCACGGTCATTCTCGCCCTGTGGTTGATCTCTTCTACAGTCCCGTTACGCCTGATGGGTTTTTCCTCATCAGTGCCAGCAAGGATTCGAGTCCTATGCTCAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCTGTGTGGAGTTGCTGCTTGGATACCAGTGCCTTACGTGCCGCAACTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCTTTAACAGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGTTCGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGTTGAGAAAATTCTCCGGATCTATGATATGAATAGGCCTGATGCGCCACCCAGAGAAGTGGATAAGTCCCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCATGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGAAACTAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGATGGCCGTTATATAACCACTGCTGATGGTTCTACTGTAAAGTTTTGGGATGCGAACTACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCAGTTTCACTGGAGCCTAAGTATGGGAACAAGTTCGTTGCCGGCGGAGAAGATATGTGGGTTCGTGTGTTTGATTTCCATACAGGGAATGAGATTGCATGCAACAAGGGGCACCACGGTCCTGTCCACTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACTGGCCCCTTGACCCTCGATGACTCAGAGACTGTGTCTGCAAATGGTTCAGTTGATAAGGTGAAGGAAACTGCAGATGAGGTTTCACGCAAGATTGAGGGTTTTCAAATTGCAGATGAGGGGAAATCTAAAGAAAAGGATGAGGCTGTGGAGGAATCAAGCTAA

Predicted protein sequences of Glyma05g08200

Limit To All Plant Sequences

>Glyma05g08200.1   sequence type=predicted peptide   gene model=Glyma05g08200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSETVSANGSVDKVKETADEVSRKIEGFQIADEGKSKEKDEAVEESS*

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