Glyma04g33110 - SoyBase

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Report for Sequence Feature Glyma04g33110

Feature Type:	gene_model
Chromosome:	Gm04
Start:	38589698
stop:	38595505
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g33110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61380	AT	Annotation by Michelle Graham. TAIR10: CCT motif -containing response regulator protein \| chr5:24675540-24678176 FORWARD LENGTH=618	SoyBase	E_val: 0	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0010031	GO-bp	Annotation by Michelle Graham. GO Biological Process: circumnutation	SoyBase	N/A	ISS
GO:0010629	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_C0SNP3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Timing of CAB expression 1 n=1 Tax=Glycine max RepID=C0SNP3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A50F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A50F related cluster n=1 Tax=unknown RepID=UPI000233A50F	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g33110

Locus	Gene Symbol	Protein Name
	PRR37	Root Preferential, Pseudo response regulator

Expression Patterns of Glyma04g33110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g33110

Paralog	Evidence	Comments
Glyma06g21120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g33110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g166300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g33110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g33110

Limit To All Plant Sequences

>Glyma04g33110.2   sequence type=transcript   gene model=Glyma04g33110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCCTCTTCATTTTGGTGGAATGAGAAAGATCTTCAGGTGACGTGGCCGGCTCCCTATCTCTACCCAACTATCCAGACCACCCACTCCCTCTCTCCTTTTCTATTGCACTTTTCGACCCTTTCCTTTCCACGTCTCCCTCTTTCCTACGCCACGCCCCGTGTGCACTGCGCCCCCCAATCCCCGCGCACGTTAGCTCACCCCCTTCCTTTCTTAATTCCAATTTAGGCACCGCTTTTCGCACGCCCCCAACCAAACAAAACAAAAAAAATAGCCGCGGTTTCCTTACCATGCTTCGCTTCGCCGACCTCTGACTCAATAATAACAATCAGCCACCATCTCCTTTTCCCTTTAGTATCTGCTAACGTGCGCCGTCTCAACGGTGTGTTTGATCTCCCTCAACGATGCTGTTTTATCGGAATGAGCAAGTCGAGGAATCGTTGTGAGCAGAATTTGATGAGAGTTTTTATGAAAGTTCTGTAGCGTCGTCGTTTTGATGGGAGGGGTAGTTGGTGAGTGAGTGAATGAGTGAGTGAGTTTTTCTGGGGGGTTGGGTATGGAGTCTGGTGATGAGATTAATTTGAACATAGAAAGTGGGAATAATGGGAAGAGTGGTGGTGATGGGTTCGTTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGATGTTCTTATCAGGTTACCTCGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCGGAGGGGCAACATATAGATATCATACTGGCTGAGCTTGACCTTCCGATGAAGAAGGGCATGAAGATGTTGAAGTACATAGCACAGGATAAAGAGTTTCGCCGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGATTTTGATCTGGTAGTATCTGACCCGAGTGATGCCAACACAAACAGCACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCTGAGTCTACTATTGCAATTGCTGCTGCTGTTGAGGAACCTCCAGATGCTCATGCATCAGAATGCGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTGGAAGGGGTTGTTAATGTAGACAAAAATGGTGCTACACATGTGAGGATGGAAGTTATGCATCAAACATGTGCTCAACAAGGGGTGAATGACCTTCAAATACGGGAAAATGGAGAGGCATATGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATACCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTTACATCAGGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCCGAGCTTGAAGTATCTGGCATGGCTTCCCAACAGGTTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATCCTAGCTCAGCTATGATTTCACAGTACAGCCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGACATCCTTCCCATATTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTTCATCTGAAGCAAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCGGAAAGGCGGCCTCGTGTGAGGGGTCAGTTTGTCAGAAAGTTGAAGGGTGCTAATGCGGATCTTAATGGGCAGCCTGCATCGATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCCGAGGATGCTTGAGCATGTCAAATTGCTATTTTGACATAAGGATGAAGGGCCAACCAATTTATGAGCTAATATTGGCCTGTCAAAAGGACTGCTGTAATGGAAAGTTCTCTCACCAAAGCACCAATTTATGAGCTTGTGCTCATGTATTTGGGGTGTTGATCCAATATGCGCCCTCATCATTTATGGTTGAAACAAGCTCATTCTGGTCTTTTTTTAATTGCAGTTCATCAAATGATCCGTACTACTGAGCTATTGCGTAGGGTATTTACCTTCTGGTGGTTATGTCCTATGCAGTTGAAAGTATCACCCCTGCGTTTTATTGAACAGTTACAAGCAGGTTGTTCTTGCTTATTTTATGGAGAAATGTTAAGACATCTTTAAAAAATTGACCTGAGAAATGAGTTATTTGACTATTTATCTAAAGTTTTACTTTCAAAATTTGACCACCATCCAAG

Coding sequences of Glyma04g33110

Limit To All Plant Sequences

>Glyma04g33110.1   sequence type=CDS   gene model=Glyma04g33110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTGGTGATGAGATTAATTTGAACATAGAAAGTGGGAATAATGGGAAGAGTGGTGGTGATGGGTTCGTTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGATGTTCTTATCAGGTTACCTCGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCGGAGGGGCAACATATAGATATCATACTGGCTGAGCTTGACCTTCCGATGAAGAAGGGCATGAAGATGTTGAAGTACATAGCACAGGATAAAGAGTTTCGCCGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGATTTTGATCTGGTAGTATCTGACCCGAGTGATGCCAACACAAACAGCACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCTGAGGTAGGAATATCAGTCCAACAAGAGCAAGAGTCTACTATTGCAATTGCTGCTGCTGTTGAGGAACCTCCAGATGCTCATGCATCAGAATGCGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTGGAAGGGGTTGTTAATGTAGACAAAAATGGTGCTACACATGTGAGGATGGAAGTTATGCATCAAACATGTGCTCAACAAGGGGTGAATGACCTTCAAATACGGGAAAATGGAGAGGCATATGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATACCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTTACATCAGGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCCGAGCTTGAAGTATCTGGCATGGCTTCCCAACAGGTTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATCCTAGCTCAGCTATGATTTCACAGTACAGCCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGACATCCTTCCCATATTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTTCATCTGAAGCAAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCGGAAAGGCGGCCTCGTGTGAGGGGTCAGTTTGTCAGAAAGTTGAAGGGTGCTAATGCGGATCTTAATGGGCAGCCTGCATCGATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCCGAGGATGCTTGA

>Glyma04g33110.2   sequence type=CDS   gene model=Glyma04g33110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTGGTGATGAGATTAATTTGAACATAGAAAGTGGGAATAATGGGAAGAGTGGTGGTGATGGGTTCGTTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGATGTTCTTATCAGGTTACCTCGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCGGAGGGGCAACATATAGATATCATACTGGCTGAGCTTGACCTTCCGATGAAGAAGGGCATGAAGATGTTGAAGTACATAGCACAGGATAAAGAGTTTCGCCGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGATTTTGATCTGGTAGTATCTGACCCGAGTGATGCCAACACAAACAGCACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCTGAGTCTACTATTGCAATTGCTGCTGCTGTTGAGGAACCTCCAGATGCTCATGCATCAGAATGCGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTGGAAGGGGTTGTTAATGTAGACAAAAATGGTGCTACACATGTGAGGATGGAAGTTATGCATCAAACATGTGCTCAACAAGGGGTGAATGACCTTCAAATACGGGAAAATGGAGAGGCATATGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATACCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTTACATCAGGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCCGAGCTTGAAGTATCTGGCATGGCTTCCCAACAGGTTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATCCTAGCTCAGCTATGATTTCACAGTACAGCCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGACATCCTTCCCATATTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTTCATCTGAAGCAAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCGGAAAGGCGGCCTCGTGTGAGGGGTCAGTTTGTCAGAAAGTTGAAGGGTGCTAATGCGGATCTTAATGGGCAGCCTGCATCGATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCCGAGGATGCTTGA

Predicted protein sequences of Glyma04g33110

Limit To All Plant Sequences

>Glyma04g33110.1   sequence type=predicted peptide   gene model=Glyma04g33110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGDEINLNIESGNNGKSGGDGFVDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYIAQDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPEVGISVQQEQESTIAIAAAVEEPPDAHASECGPDVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNLEGVVNVDKNGATHVRMEVMHQTCAQQGVNDLQIRENGEAYESQSQDDLPSSTSIPDSLSIERSCTPPASMEVSQQKHYREENLHQGVMHPRNGTHCSELEVSGMASQQVYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHPSSAMISQYSHLPQGGPHGTGMTSFPYYPMSICLQPGQIPNPHSWQSFGNSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLKGANADLNGQPASIDYDEDDEEDEDDQGARDSSPEDA*

>Glyma04g33110.2   sequence type=predicted peptide   gene model=Glyma04g33110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGDEINLNIESGNNGKSGGDGFVDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYIAQDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPESTIAIAAAVEEPPDAHASECGPDVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNLEGVVNVDKNGATHVRMEVMHQTCAQQGVNDLQIRENGEAYESQSQDDLPSSTSIPDSLSIERSCTPPASMEVSQQKHYREENLHQGVMHPRNGTHCSELEVSGMASQQVYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHPSSAMISQYSHLPQGGPHGTGMTSFPYYPMSICLQPGQIPNPHSWQSFGNSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLKGANADLNGQPASIDYDEDDEEDEDDQGARDSSPEDA*

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