Glyma04g02840 - SoyBase

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Report for Sequence Feature Glyma04g02840

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2045157
stop:	2053029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19880	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr1:6900648-6903818 REVERSE LENGTH=538	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF18	Panther	UVB-RESISTANCE PROTEIN UVR8-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_B9R853	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RCC2, putative n=1 Tax=Ricinus communis RepID=B9R853_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JT49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT49_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02840

Paralog	Evidence	Comments
Glyma06g02850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g026100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02840

Limit To All Plant Sequences

>Glyma04g02840.1   sequence type=CDS   gene model=Glyma04g02840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCGTCCGAAGCGGAGAAGAAGGTCGAGGAGGAAGAGAAGAAGGAAGAGGTCAAAGGGGGAGAACTCCTGTTCTGTGGTGCCACTTGTTGGGATATCATTGGTCGTCGTAAAGGCCCCGTCGACGGTAACCTCGTCTCTCCCTCGCGCCTCCGTCCTCTCGTCGGCGTCGATATTCGCTACGTCGCCTCCGGCTGCGTGTCTTGTCATTGCGTGGCGTTGGACGTTGAAGGGCGTTGTTATACATGGGGACGTAATGAGAAAGGGCAACTGGGTCATGGAGATACGATTCAGCGTGATAGGCCAACTGTGGTGTCTGAACTTTCCAAATACAAAATTGTCAAAGCTGGATCAGGGAGGAGCCATACAGTTGTTGTTACGGATGATGGAAATTCCCTAGCATTTGGATGGAACAAACATGGACAACTAGGTTCTGGTTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCATTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCACGTCCTCGAGCAATTGCTGCTCTTGCTGGGGAAGCAATTGTCAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTTCGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAGTGGGTCCCACGACGTGTTGAAGTTTTTCAAAATAGAAATGTTTTGCCACCCGATGCAATCATATCAGCAGGTTCTGTGAATTCTTCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGCAAATTAAAGAACACTGGTGATGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGTGGTTGGAATCTACTATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGAATGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGATTTACTTGAGGGTATGCATGTAATAAGTGTTGCTTGTGGTATGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGATGGGAAAGCTGTTGGTGAAGGTAATGAGGCCGTAAACACAACTCCAGTGCCTAAGCAGGCTGCTAAAAAGGGTGCAAAAGGAGCTGACAATTCAAAGAAGAGGAAACAATCAAAAGATTCATCTGACTCAGATGAGGATGCTGAAGAAAGTGAGGAGGATAGTGAGGATCAAATTAATGGTGAGGCTGAGGCGAAAAGGCCACGTGGTTCTGGTAAAGGCCGAGGTAAGACACCCAAAAAGTCAGGTGCTAAGGGAAAAGGGTCGGTCTCTGGCCGTGGTCGGGGTGGGACTGCAGCTAATAAAAACAGTTCTAAATCCCCTCAGGTGAAATCTGGTAAGAGAGGAAGACCCCGTAAGTCATAA

Predicted protein sequences of Glyma04g02840

Limit To All Plant Sequences

>Glyma04g02840.1   sequence type=predicted peptide   gene model=Glyma04g02840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASEAEKKVEEEEKKEEVKGGELLFCGATCWDIIGRRKGPVDGNLVSPSRLRPLVGVDIRYVASGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVKAGSGRSHTVVVTDDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRAIAALAGEAIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVEVFQNRNVLPPDAIISAGSVNSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNLLCMDSGNMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDLLEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVGEGNEAVNTTPVPKQAAKKGAKGADNSKKRKQSKDSSDSDEDAEESEEDSEDQINGEAEAKRPRGSGKGRGKTPKKSGAKGKGSVSGRGRGGTAANKNSSKSPQVKSGKRGRPRKS*

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