Glyma03g32920 - SoyBase

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Report for Sequence Feature Glyma03g32920

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40650935
stop:	40655650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37540	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:15751695-15753820 REVERSE LENGTH=321	SoyBase	E_val: 7.00E-162	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1208	KOG	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	JGI		ISS
PTHR24320	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7L0K2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Retinol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7L0K2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPD1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32920

Paralog	Evidence	Comments
Glyma19g35630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g171900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32920

Limit To All Plant Sequences

>Glyma03g32920.1   sequence type=CDS   gene model=Glyma03g32920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGTGTTATTTCGTTGGTAACAGGAATGGCTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCAGAACAGGTTACTGAAGGAGTTGATGCCAGCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGATTGGAGACAGCACGAGTGTTGGCTCTTCGAAAGGTCCATGTCATCATTGCAGTACGAAACATGGTGTCTGCAAAAGAGGCTAAACAACAAATACTAGAGGAGAATGAGTCTGCACGAGTGGACATAATGAAGCTCGACCTTTGCTCAGTGAATTCTATTAGATCATTTGTGGACAACTTCATAGCTCTTGATCTTCCTCTCAACATTTTAATAAACAATGCTGGAGTGATGTTCTGCCCATTCAAGCTCTCAGAGGATGGCATTGAGATGCAATTTGCAACAAACCATATTGGTCATTTCCACTTATCAAACCTACTTCTTGACAAAATGAAACAAACTGCAAAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATTAGATTTAATAAGATCAATGAACGGAAAGGTTACGGTAACAAGAAGGCGTATGGACAGTCCAAGTTAGCAAACATATTACATACAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATTACAGCAAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTTATGAGACACTCTTCTTACCTTATGCACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACATGCCAAAAACAAACAGCTTGCAAAGAAACTCTGGGATTTCAGTAACGATTTGATCAAATCAATCTCAAAAGCTTGA

Predicted protein sequences of Glyma03g32920

Limit To All Plant Sequences

>Glyma03g32920.1   sequence type=predicted peptide   gene model=Glyma03g32920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGVISLVTGMAGPSGFGSASTAEQVTEGVDASNLTAIITGGASGIGLETARVLALRKVHVIIAVRNMVSAKEAKQQILEENESARVDIMKLDLCSVNSIRSFVDNFIALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHIGHFHLSNLLLDKMKQTAKATGIEGRIINLSSIAHNYTYRKGIRFNKINERKGYGNKKAYGQSKLANILHTNELSRRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKVFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNQCKPSSHAKNKQLAKKLWDFSNDLIKSISKA*

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