Glyma03g30910 - SoyBase

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Report for Sequence Feature Glyma03g30910

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38762998
stop:	38767994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06080	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) \| chr3:1834959-1837524 REVERSE LENGTH=469	SoyBase	E_val: 0	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_I1JNT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JNT2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LDG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28L1.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LDG2_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g30910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30910

Paralog	Evidence	Comments
Glyma19g33730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g152400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g30910

Limit To All Plant Sequences

>Glyma03g30910.1   sequence type=CDS   gene model=Glyma03g30910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTTTTTTTTTCCTTCATACCCAACGCGATGAACAAGAGCAAGAGCGCAATAACACCAAAGGACTCAGGCGACAACCCCGTGACCCACTTGGATTTTCTCAAGAAATTCAAACGCTTTAACCCTCTCGAGTCTTCTTTAGGAGTACTCGCCTTTTTCTTCGTCGCTTCTCTCTTCATGGCCTCCTTCTTCTACTTGGATTACAAGGGCTTCCGCTCCAGAGGCACCACCATCATTGACTTGGATTTTTCATCTTCTTCTTCTTCTTCTGTTTCTGTTTCTTCTGCTCCGGTTCAGTTTCTGAGCCAAGATGGTGATAAATGTGATGTCTTTGATGGGAATTGGGTTTGGGATGAGACCTATCCCCTTTACCATTCTGCAAACTGTTCTTTCTTGGATCAAGGTTTTCGCTGCTCCGAGAATGGCAGGCCTGATACTTTCTACACCAAGTGGCGATGGCAGCCCAAAGATTGCAACTTGCCCAGATTTGATGCAAAGAATATGTTGGAAAAGCTACGGGACAAGCGACTAGTGTTTGTTGGTGATTCGATTGGAAGGAACCAATGGGAATCACTGCTTTGTATGCTCTCTCCGGCAATTGCAAATAAGGCTAGGGTCTATGAGGTTAATGGGAGCCCAATTACAAAGCATACAGGCTTCTTGGCATTTAAGTTTGAAGATTTCAACTGTACCATTGAATACTACAGATCACCATATCTTGTAGTGCAGGGACGGCCTCCTTCTGGTGCACCTGATGGGGTAAGAATGACTTTGAGAGTGGATCATATGGACTGGATTTCTCATAAGTGGAGAGATGCAGATGTGCTGATTCTCAATGCTGGACATTGGTGGAATTATGAGAAGACTGTCAAAATGGGTTGTTACTTCCAAATAGGGGAGGAAGTGAAGATGAATATGACTACAGAAGACGCATTCAGAAAATCAATAGAGACAGTAGTTGATTGGGTTGCCAATGAAGTAAACATAAACAAAACTTATGTCATTTTCCGAACTTATGCTCCTGTCCATTTCAGGGGTGGTGACTGGAATACTGGTGGTGGTTGTCACTCTGAAACATTACCCGATTTAGGCTCCTTGCCAACAGTATCTGACATCCATTTCAGAACTCTCATTGATGTCTTGTCAGAACGCACAAATAAATCTGAAGTTTTGAATCTGGACTTGCTTAATGTCACCCAAATGTCACAACGCAGAAGAGACGGCCATGCATCTATTTACTATATCGGACCAGACAGCACAGCCTCTATGCAGCGGCAAGACTGTAGCCATTGGTGCCTACCTGGTGTTCCTGATTCATGGAACGAGATTCTTTATGCACTTCTTCTCAAGTGGGAGGATTTTTTTGAATGGAGACAGAATGCAACAAAAATTTCTCAAGTTTCACCATAA

Predicted protein sequences of Glyma03g30910

Limit To All Plant Sequences

>Glyma03g30910.1   sequence type=predicted peptide   gene model=Glyma03g30910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVFFSFIPNAMNKSKSAITPKDSGDNPVTHLDFLKKFKRFNPLESSLGVLAFFFVASLFMASFFYLDYKGFRSRGTTIIDLDFSSSSSSSVSVSSAPVQFLSQDGDKCDVFDGNWVWDETYPLYHSANCSFLDQGFRCSENGRPDTFYTKWRWQPKDCNLPRFDAKNMLEKLRDKRLVFVGDSIGRNQWESLLCMLSPAIANKARVYEVNGSPITKHTGFLAFKFEDFNCTIEYYRSPYLVVQGRPPSGAPDGVRMTLRVDHMDWISHKWRDADVLILNAGHWWNYEKTVKMGCYFQIGEEVKMNMTTEDAFRKSIETVVDWVANEVNINKTYVIFRTYAPVHFRGGDWNTGGGCHSETLPDLGSLPTVSDIHFRTLIDVLSERTNKSEVLNLDLLNVTQMSQRRRDGHASIYYIGPDSTASMQRQDCSHWCLPGVPDSWNEILYALLLKWEDFFEWRQNATKISQVSP*

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