Glyma03g16660 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g16660

Feature Type:	gene_model
Chromosome:	Gm03
Start:	21186480
stop:	21201852
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g16660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16470	AT	Annotation by Michelle Graham. TAIR10: proteasome subunit PAB1 \| chr1:5623122-5625439 FORWARD LENGTH=235	SoyBase	E_val: 9.00E-161	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005839	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0019773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex, alpha-subunit complex	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
KOG0181	KOG	20S proteasome, regulatory subunit alpha type PSMA2/PRE8	JGI		ISS
PTHR11599	Panther	PROTEASOME SUBUNIT ALPHA/BETA	JGI		ISS
PTHR11599:SF16	Panther	PROTEASOME BETA/DELTA SUBUNIT	JGI		ISS
PF00227	PFAM	Proteasome subunit	JGI		ISS
PF10584	PFAM	Proteasome subunit A N-terminal signature	JGI		ISS
UniRef100_I1JLZ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit alpha type n=2 Tax=Glycine max RepID=I1JLZ4_SOYBN	SoyBase	E_val: 1.00E-170	ISS
UniRef100_I1JLZ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit alpha type n=2 Tax=Glycine max RepID=I1JLZ4_SOYBN	SoyBase	E_val: 1.00E-170	ISS

Expression Patterns of Glyma03g16660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g16660

Paralog	Evidence	Comments
Glyma01g25940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g16660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g073300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g16660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g16660

Limit To All Plant Sequences

>Glyma03g16660.2   sequence type=transcript   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGTCCCTACTTCCACTTTGAGTCACCAGGGCAGCCTCGAAACCTCGTCCAATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCAATTCCTGTCAATCAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGATGATATGGAGCTTGATGATTCAGTCCACACAGCAATATTGACTCTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATGTGCAATGAGGAAATCGTGTGTTCCTGAATTTGTTTTTTGTTTCACAGTTGGATTTAATTGGTAGAGTGCCTTTGTGATGGCAATAGTGAATTTCTGAGCTACTCGTTGTGACGACCAGCAAGCCTTCCGATAAACCTTTTCCAAAGTCATCAACATTTTCAAACAATCCTAGTTTGTTTATACGATGCGGCTATAACTTCTTAATGAATACTGCTAATTTATTATCCCCCTACCCCACTCACACACACACCCATCCACCTTGTTCATTTACTTCTCGGCTTTTTCTTTTTTTCCCTTGGGATTTTGTTGTGAACAAGGTCCACACTAGTCTTTCAACCTAAGTAAGAGTATCTTATTTGATATGTTGGAGAAGTATATAAACTTAACGTCCATGCAACAACACAATTTCAATATATTATATATTGATTTAGATATATATGAGAGCTTATCATAAATACAA

>Glyma03g16660.3   sequence type=transcript   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCACTTTGAGTCACCAGGGCAGCCTCGAAACCTCGTCCAATTGAAGTGCAAACTTTGAACCCCAATTTCAATAGGCATAACAGTGAAAAGGCTGAATCAAACCTCAAATTTTATTATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCAATTCCTGTCAATCAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATTCAGTCCACACAGCAATATTGACTCTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATGTGCAATGAGGAAATCGTGTGTTCCTGAATTTGTTTTTTGTTTCACAGTTGGATTTAATTGGTAGAGTGCCTTTGTGATGGCAATAGTGAATTTCTGAGCTACTCGTTGTGACGACCAGCAAGCCTTCCGATAAACCTTTTCCAAAGTCATCAACATTTTCAAACAATCCTAGTTTGTTTATACGATGCGGCTATAACTTCTTAATGAATACTGCTAATTTATTATCCCCCTACCCCACTCACACACACACCCATCCACCTTGTTCATTTACTTCTCGGCTTTTTCTTTTTTTCCCTTGGGATTTTGTTGTGAACAAGGTCCACACTAGTCTTTCAACCTAAGTAAGAGTATCTTATTTGATATGTTGGAGAAGTATATAAACTTAACGTCCATGCAACAACACAATTTCAATATATTATATATTGATTTAGATATATATGAGAGCTTATCATAAATACAA

Coding sequences of Glyma03g16660

Limit To All Plant Sequences

>Glyma03g16660.1   sequence type=CDS   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCAATTCCTGTCAATCAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATTCAGTCCACACAGCAATATTGACTCTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAA

>Glyma03g16660.2   sequence type=CDS   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCAATTCCTGTCAATCAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGATGA

>Glyma03g16660.3   sequence type=CDS   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCAATTCCTGTCAATCAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATTCAGTCCACACAGCAATATTGACTCTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAA

Predicted protein sequences of Glyma03g16660

Limit To All Plant Sequences

>Glyma03g16660.1   sequence type=predicted peptide   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVNQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDSVHTAILTLKEGFEGQISGKNIEIGIIGADKNFRVLTPAEIDDYLAEVE*

>Glyma03g16660.2   sequence type=predicted peptide   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVNQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKR*

>Glyma03g16660.3   sequence type=predicted peptide   gene model=Glyma03g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVNQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDSVHTAILTLKEGFEGQISGKNIEIGIIGADKNFRVLTPAEIDDYLAEVE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain