Glyma03g09080 - SoyBase

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Report for Sequence Feature Glyma03g09080

Feature Type:	gene_model
Chromosome:	Gm03
Start:	10489949
stop:	10492277
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g09080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31980	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). \| chr4:15464905-15469204 FORWARD LEN	SoyBase	E_val: 1.00E-35	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03140	PFAM	Plant protein of unknown function	JGI		ISS
UniRef100_G7JN13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Otubain n=1 Tax=Medicago truncatula RepID=G7JN13_MEDTR	SoyBase	E_val: 2.00E-115	ISS
UniRef100_I1JLI5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLI5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g09080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g063400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g09080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g09080

Limit To All Plant Sequences

>Glyma03g09080.2   sequence type=CDS   gene model=Glyma03g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACAACAACCGGACTTCAGTTGGATGGTTCCCATTGAAGTGATGCTGGGTGCCCTCTACCACGGACAAGTCCAAGCCTGCAGCATCTCAAGCGTCACGGACGAGCTTCGAAGCCCGAACGAGGCGGCTTTCAAGCCAAAGGAGGTCTCCATAGGACCCTTGCACAGAGGAACCACGAGGCACGTGCAGCTAATGGAAGAGACAAAATGGCATTACATGCGCGAATTTCTCGACAGAAGAGGCACGCAGGAGCAGAACAGAAGATCGGAGCGGAGGCTCAGAGAGTGTGGCACCGATATCCTCAAGCTGGATAAGATAATCATGGCATGCTATGGAGGTAACATCAGATCAGAACCGCAAGAGTTGGCTAAAATAATGATTGTAGATGGTTGTTTTCTATTGGAACTCCTTATCAGGCTTGGTGATTTTATATGTAACAATAGTAGTAGTTATGCAAATGACCCTATACTGAAAAATGAGGAGAAGATGGTGTCTGTTCTGAATGATATCACATTGCTTGAGAACCAAATTCCATTCATTGTTCTCAAGAAGTTGTATAGGAAGGTCTTTCCCGATGGCAGTGACATCAACAACGATAACCGGGTTGCTGATATCGTTTGCAAAGCTTTTGGTTACACTGAGGTGAAAGCCCCGGTCCACATACTTCACTTGATGCATTTGTCCACAGTTGAACAGACTCAGCAAGAGGGTAAACGCGTGGAGCAAGAACTATTGCGCTGCGCCACGAGACTTCAAGCTGCAGGAGTAGAAATTAAAGCTGCAAACACCATTGCTCGCCATAAGTTGGTGGATTGGTTCAATTTTGAGATAAGTTTCAGTGACAGCGTGTTGCGGATTCCACCGCTGTATGTTAAGGACACTACAGAAGTGAGGTGGAGGAATTTGATCGCGTGGGAGCAGAGCAGAATTTGGATCAGATGTAAATACACTTCGTATGCATTGTTCTTTCAAGGTTTGGTTTGTTGTAAGCATGACATTGAGCTGCTTGAGAAGAATGGGGTGATAGTGAACAAGGCCGGGAAGAGCACTGATGAACTGCTGGATCTGTTTCGAACGATTGCGAAGGGAGCAGAGTACATGGATTCGAGCTATAGCGAAATTGGTGCGAGGTTGAACATGTACAACAGGGGAAAAATCACAACTGCATTTCAAGGATTGCCTGTAGTCACTTGGCACAAGTGCAGACATGTTTTGCAGATCATTGTTTACTATTGGGGAAACTGGTACAGAATTTTGATACGCGATCATATTCCCACGGTGTGGAAATTCATAGGAGTGTTGGCAGCTGCTGCACTTCTTGTTCTCACAATTATGCAAACCTATTACTCATCCCGCAATAAAGACTGA

Predicted protein sequences of Glyma03g09080

Limit To All Plant Sequences

>Glyma03g09080.2   sequence type=predicted peptide   gene model=Glyma03g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQQPDFSWMVPIEVMLGALYHGQVQACSISSVTDELRSPNEAAFKPKEVSIGPLHRGTTRHVQLMEETKWHYMREFLDRRGTQEQNRRSERRLRECGTDILKLDKIIMACYGGNIRSEPQELAKIMIVDGCFLLELLIRLGDFICNNSSSYANDPILKNEEKMVSVLNDITLLENQIPFIVLKKLYRKVFPDGSDINNDNRVADIVCKAFGYTEVKAPVHILHLMHLSTVEQTQQEGKRVEQELLRCATRLQAAGVEIKAANTIARHKLVDWFNFEISFSDSVLRIPPLYVKDTTEVRWRNLIAWEQSRIWIRCKYTSYALFFQGLVCCKHDIELLEKNGVIVNKAGKSTDELLDLFRTIAKGAEYMDSSYSEIGARLNMYNRGKITTAFQGLPVVTWHKCRHVLQIIVYYWGNWYRILIRDHIPTVWKFIGVLAAAALLVLTIMQTYYSSRNKD*

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