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Report for Sequence Feature Glyma03g09050

Feature Type:gene_model
Chromosome:Gm03
Start:10373779
stop:10375240
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g09050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09020AT Annotation by Michelle Graham. TAIR10: alpha 1,4-glycosyltransferase family protein | chr3:2753307-2754542 FORWARD LENGTH=411 SoyBaseE_val: 2.00E-90ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0045088GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0008378GO-mf Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PTHR12042Panther LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE (ALPHA- 1,4-GALACTOSYLTRANSFERASE) JGI ISS
PF04488PFAM Glycosyltransferase sugar-binding region containing DXD motif JGI ISS
PF04572PFAM Alpha 1,4-glycosyltransferase conserved region JGI ISS
UniRef100_G7KRB0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lactosylceramide 4-alpha-galactosyltransferase n=1 Tax=Medicago truncatula RepID=G7KRB0_MEDTR SoyBaseE_val: 6.00E-125ISS
UniRef100_I1JLI3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JLI3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g09050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma03g09050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g09050
>Glyma03g09050.2   sequence type=CDS   gene model=Glyma03g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTGCATAAGTTCTTTCCAATTGCAACTCTCACCAGACACAATAATCCAAAAGTTGTTTGTTCATCGGCTGCTTAAACATGCCAAGTTATCTGTCTTCCCTCTAATCACTTTCTCTGCCATAATTTTTCTTATCTATGCTGATAGTATTATCTACCATGATTCATTACACTCAGCAACTAATAAAGAAGCTACAGAGAAGTTGGAAGTTCACAATCACAGAACAAAAGAAGAAATAAGGTCAACACTTGTTCTCATACCTTTACATTCCATTCGAGAGAAGGATGAAGCTGATAGTCAAAAACAGAAGGCTCTAGTCACCCCATTAAATGTCACAGAAGAAGAAAGACAAACATGTTTATTTGGAGGGAGAGAATTGCTTCCTGTGGAAAGCATTTTCAAGAACCATCCTAAGGCATGTCTGACAATTCTATCAAGAACTTTGGACACCAAGCATGGCTACAGGATCCTGAAACCACTGCTTGATCGTAGGTTCAAAGTGCAGGCAATGGCCCCAGACTTGCCATTTTTGGTCAAGGGGACTCCGGTCGAAGCTTGGTTTCGTGAGCTAAGGAAGGGTAGAAAGGACCCCAGTGAGATTCCTTTGTCTCAGAATCTATCTAATCTGATAAGACTTGCAGTTCTGTACAAATATGGTGGTGTCTACATAGATACATACTTTATACTTTATAGTAAGCACTGGACTAGATTAAATAATGCAGTTCTGATTTTTGATATTGGACATCCACTTCGGCACAGATTCATCAATGAATTTGCCTTGACTTTCAATGGAAACAAATGGGGGAATAATGGTCCCTACCTGGTTTCCAGAGTGATTAAGAGGCTGTTTAAAAGACATGATTTCAACTTTACAATCTTGCCGCCTATGGCCTTTTATCCAGTGGATTGGAACAAGATAAAATCAAGACGGGTAGAAGCCAACCTGCTTCAGCTCAGTGGGAAGACTTATGGGATTCATCTATGGAATAAACATAGTAGCAGATTGACAATTGAAGATGGAAGTGTCATTGGAAGACTTATATCAGATTACTGTGAAACACTCTAG
Predicted protein sequences of Glyma03g09050
>Glyma03g09050.2   sequence type=predicted peptide   gene model=Glyma03g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCISSFQLQLSPDTIIQKLFVHRLLKHAKLSVFPLITFSAIIFLIYADSIIYHDSLHSATNKEATEKLEVHNHRTKEEIRSTLVLIPLHSIREKDEADSQKQKALVTPLNVTEEERQTCLFGGRELLPVESIFKNHPKACLTILSRTLDTKHGYRILKPLLDRRFKVQAMAPDLPFLVKGTPVEAWFRELRKGRKDPSEIPLSQNLSNLIRLAVLYKYGGVYIDTYFILYSKHWTRLNNAVLIFDIGHPLRHRFINEFALTFNGNKWGNNGPYLVSRVIKRLFKRHDFNFTILPPMAFYPVDWNKIKSRRVEANLLQLSGKTYGIHLWNKHSSRLTIEDGSVIGRLISDYCETL*






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