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Report for Sequence Feature Glyma03g05135

Feature Type:gene_model
Chromosome:Gm03
Start:5434788
stop:5437369
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g05135
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70730AT Annotation by Michelle Graham. TAIR10: Phosphoglucomutase/phosphomannomutase family protein | chr1:26669020-26672726 REVERSE LENGTH=585 SoyBaseE_val: 2.00E-151ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005992GO-bp Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process SoyBaseN/AISS
GO:0006874GO-bp Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis SoyBaseN/AISS
GO:0009590GO-bp Annotation by Michelle Graham. GO Biological Process: detection of gravity SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019255GO-bp Annotation by Michelle Graham. GO Biological Process: glucose 1-phosphate metabolic process SoyBaseN/AISS
GO:0019388GO-bp Annotation by Michelle Graham. GO Biological Process: galactose catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048229GO-bp Annotation by Michelle Graham. GO Biological Process: gametophyte development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0004614GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglucomutase activity SoyBaseN/AISS
GO:0016868GO-mf Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, phosphotransferases SoyBaseN/AISS
PTHR22573Panther PHOSPHOHEXOMUTASE FAMILY MEMBER JGI ISS
PTHR22573:SF5Panther PHOSPHOGLUCOMUTASE JGI ISS
PF02879PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JGI ISS
PF02880PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JGI ISS
UniRef100_G7L9S8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglucomutase n=2 Tax=Medicago truncatula RepID=G7L9S8_MEDTR SoyBaseE_val: 2.00E-164ISS
UniRef100_UPI0002339C0DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339C0D related cluster n=1 Tax=unknown RepID=UPI0002339C0D SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g05135
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g05135 not represented in the dataset
Glyma03g05135 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g05135 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma03g05135
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g05135
>Glyma03g05135.1   sequence type=CDS   gene model=Glyma03g05135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATGAGTGTTGCAAGGCTGAAGAAGGACGAGATCCAGAGGCTGAAGAAGGCGATCGATTCGCTCCGGTGTCCGACGGTGGAGCTGCATGAGTCAGAGACGAGTGCGGCGGCTGAAGAACCTCCTCAAAGAGAGAGAAAGAATGGTGACATTCCTAGAGACGAGCGCAACAGCACCACCATCACCATCGCCGCTGTTATTCAAACCCTAACCCTCCTCACCCTCACCCTCAACTTGCTTTGCTCGTCTTTTCTGGTGGGATCGCCTTCAACGGCGTCGTCGAGGAGCTCAAGAATTTTACCACCCGCGTCGCTCACGTTCTCCTCGTTTCCGAAGATGGAGGAAGCACTACTAAGATTGTCAATTTTTGATTTTGAATCTATCAGGAAACTGTTGTCATCTCCTAAATTCACATTTTGGTATATTTATGGATCATATGCAAAGAGTATTTTTGTGGATGAGCTTGGAGCACAAGAAAGCTCTTTACTGAACTGTACACCAAAGGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGGTTTTTTGTCACTGCTTTAGATTCCGTGGCCATTATCGCTGCAAATGCTGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCTAGGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTTGCCAAACATCTGAATTTGAAATTTTTTGAGATATATTGCTCTTCAATACATGTCCCCACGGGTTGGAAGTTCTTTGGTAATTTAATGGATGCTAGATTATGTTCAGTCTGTGGTGAAGAAAGTTTTGGGACTGGTTCTGGCCGTATTCGTGAGAAAGATGGAATCTGGGAAGTTTTGGCCTGGCTATCTATACTTGCATATAAAAATAAAGATAAACTTGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGTCAGCATTGGGCTACTTATGGGCGCCATTATTATAATCAATATGACTATGAAAACGTGGATGCAGGTGCAGCAAAGGAACTAATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCGATCAGTAT
Predicted protein sequences of Glyma03g05135
>Glyma03g05135.1   sequence type=predicted peptide   gene model=Glyma03g05135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMSVARLKKDEIQRLKKAIDSLRCPTVELHESETSAAAEEPPQRERKNGDIPRDERNSTTITIAAVIQTLTLLTLTLNLLCSSFLVGSPSTASSRSSRILPPASLTFSSFPKMEEALLRLSIFDFESIRKLLSSPKFTFWYIYGSYAKSIFVDELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSEPQDEPPEFGAASDGDADRNMVLGKRFFVTALDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEIYCSSIHVPTGWKFFGNLMDARLCSVCGEESFGTGSGRIREKDGIWEVLAWLSILAYKNKDKLEDKLVTVEDIVRQHWATYGRHYYNQYDYENVDAGAAKELMAYLVKLQSSLSEVDQY






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