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Report for Sequence Feature Glyma02g40863

Feature Type:gene_model
Chromosome:Gm02
Start:46085815
stop:46089563
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g40863
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03270AT Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:762136-763075 REVERSE LENGTH=159 SoyBaseE_val: 3.00E-52ISS
GO:0002238GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
PF00582PFAM Universal stress protein family JGI ISS
UniRef100_A8IXR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Brassica rapa RepID=A8IXR1_BRACM SoyBaseE_val: 2.00E-51ISS
UniRef100_UPI000233783CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233783C related cluster n=1 Tax=unknown RepID=UPI000233783C SoyBaseE_val: 4.00E-96ISS

Expression Patterns of Glyma02g40863
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g40863 not represented in the dataset
Glyma02g40863 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40863
ParalogEvidenceComments
Glyma14g39190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40863 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma02g40863
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g40863
>Glyma02g40863.1   sequence type=CDS   gene model=Glyma02g40863   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCATGACAAGCTCTACACAACTTTTACAGCCGCAGAATTTAAGCAAACAAGTAAAAAAATAAAGACAGAAGAACAAATTGATGACCATGAACATATTGACAACGGATTTGCTGGAGAGAAACAGAACTCAACCTTTCAGTTTTTGGCATCATCATTCAGATATGGCAAAGGCACGAACTGTTGGGCCGTTGATAATCTCATCAACAAAGGTGATCAAATCATCTTGATCACCGTTCAGCCTCCCCAAGCTCATCACACCCGAAAGGAGCTTTTTGAGGACACTAGTTCACCTTTAGTGCCTCTGGAGGAATTGAGGGAGTTGAATTTTACTAAGCAATATGAGATTGCCGGGGATCCTGAGGCAAAGGCAGTTGCAAAGGTGTATTGGGGAGATCCAAGGGAGAAGTTGTGTAATGCTGTAGAAGATCTTCACCTGGACTTTTTGGTTGTTGGAAGCAGGGGTTTAGGTCCCATTAAAAGGGTGTTGTTGGGCAGCGTAAGCAATAATGTGATGACAAATGCTTCTTGCCCCGTCACAGTGGTTAAGGGAAAACAATCTTCCAATTCCCATCATTAA
Predicted protein sequences of Glyma02g40863
>Glyma02g40863.1   sequence type=predicted peptide   gene model=Glyma02g40863   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LHDKLYTTFTAAEFKQTSKKIKTEEQIDDHEHIDNGFAGEKQNSTFQFLASSFRYGKGTNCWAVDNLINKGDQIILITVQPPQAHHTRKELFEDTSSPLVPLEELRELNFTKQYEIAGDPEAKAVAKVYWGDPREKLCNAVEDLHLDFLVVGSRGLGPIKRVLLGSVSNNVMTNASCPVTVVKGKQSSNSHH*






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