Glyma02g38790 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g38790

Feature Type:	gene_model
Chromosome:	Gm02
Start:	44138604
stop:	44149762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g38790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07660	AT	Annotation by Michelle Graham. TAIR10: Kinase-related protein of unknown function (DUF1296) \| chr3:2445275-2450372 REVERSE LENGTH=841	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12758	Panther	APOPTOSIS INHIBITOR 5-RELATED	JGI		ISS
PTHR12758:SF13	Panther	APOPTOSIS INHIBITOR 5-RELATED	JGI		ISS
PF06972	PFAM	Protein of unknown function (DUF1296)	JGI		ISS
UniRef100_Q9SSE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLP3.11 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SSE4_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AB35	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AB35 related cluster n=1 Tax=unknown RepID=UPI000233AB35	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g38790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g38790

Paralog	Evidence	Comments
Glyma14g36880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g38790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g222900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g38790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g38790

Limit To All Plant Sequences

>Glyma02g38790.1   sequence type=CDS   gene model=Glyma02g38790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGTGCGGGGTTTAGGGCTTCAATTCCGAGCAGTGTGAGGAGGACGATCCAGAACATCAAGGAGATCACGGGCAATCACAGTGAAGAAGACGTCTATGCAATGCTCAAGGAATGTTCCATGGATCCCAACGAGACTACTCAGAAGCTTCTCCTTCAGGACACATTTCATGAGGTCAAGAGAAAGAAGGACAGAAGAAAGGAGAATCTTAACAACAGGGAATCTGTGGAGCCACGCTGGAGGCCTGGTACCCTAGGGCGGGGAGCTAGGGGTGGTCGGGGAAATTTTTCACCTCATAATGCATCACATGATGCTGCTGGTAGCAAGAATTCTGGTACAGGAAAAGATAATGGAACTCCACAAGCAACTGAGAAAGTTGTGCCACCTTTGTCAGCTTCTCAAGAGAAAATATCTAAAGAAAAAAGTTCTGGAACAAGCTCTGTACCCATTAATGCCAATGGTCCGACAAGCGTAACTTCTGGAACTACTAGTGGTACTAGTCCTTCCCCTTCATCTGCTGGAACTGGAGACAGATTGGGTCCATCTTCTTGCGATATTAATAATTTGAATAGTGCTTTGCCTTCTGATAGTTCAAATAAAGTTGCAACAGTTGCTTCAGGAAGTGGATCAATGCTTTCCTCCAGTAACCACCCTGCATCTGGACCAGCATCTTCATCGGCTGCCCATTTCTCTTCTTCAGACCCAGTACTGGTTCCATCTGATGATTTATGGTTTCCTGGTGCTGTTGGTGCTGTTGGTGCAATTAGATGTGAAGTGGGAAACTTACACCCTCCTGGGGAATTACGTGCTGTTAGCTCTGCTGAGAACAAATTAACTGCTGCTTCTGAGACTGGTAGCTCTTCTGTGCAAGGAAAGATTCAAGGCAAATCCCAGGGAGCAGCAAAGAATCATGTTACTGAGATGTCATCCACTTCAACAGTAACTCACAGTAGCCCTTCAACTAGTAGACCTTCCTCTAATTACAGTAGCCGATCACAACAATTAGTTGGCCCTCAAAAAGCTGGTTCTAATAAGGAGTGGAAACCAAAGCCAACAAATACGATTAATCAGGGTTCTGGACCAGCTAGTGCATCTGAGGTTCTTGTTTCAGTTGACTCAACTGGGCAGTTACAATCTGCATCTAGTGCTCTTAACTCTGAAGAAGCTACTTCAAAACTGCAGAGGAAGCTGGAGGATTTTCATCTTCCACAGCGTCAACATGTTATACTTCCAAACCATATCATTGTGCCTGATTCTGAAAAGAACAAGTTTAGCTTTGGAAGTTTGGGAGTTGCTTTGGGAGTTAATACAAGCTATGTAAGTGGCCCAGAGAGCGAAAAGAGTTCTACACCTGTTTCTGAAACATCTCAGACTGTTGAAGAAACTGTGGAGGAGCAGGATTCCAGTCAAAATGCTGCGGTTATTTCTGAGGTTGGAGATTATCCTGACCATCCACAATCACCCACTAATGGAGCTGAGAATTTGTCATCCAGTGAGGTTGATGGCTCATCCAGTGCTATTCAAGAGCATAACGAGTCCAAGCAAGACACTGCTTTGCCATCTGGAGGTCATCAGTACTCAGGGGTACTTACTTCTCCAAACTACAGTTTTGGATTCGTGCCCCCAGTGTTGGGTACTCAGCTAACACAGTTTGACAATTCTGAGTCTCAAACACGTGATGCTTCCCGGCTTCCAAGTTTTATTGTTCATCAACAATTGGATCCGGCTAGTTACTATGCCCAGTTTTACCGCACAGGTGCTGATAGTGACGGTCGCCTTTCACCTTTTTCTTCTGCTGGGGCTAACACCAAGTACAATGGCAATGTTACAGTGCTTCCTGCTCCAACTTCTCAATCTCCTCAAGAGGGAGTTGTCTTGTCCACCACAGGTCCAACACCACTTGTGACTCAAGCTGCTGGGCCAATGCAAAGCTCAATAGCTGTTACTCAACAGCCTGTCCCTGTCTTTCGACCTAGTGGGGTGCATATATCCCATTACCCTCCTAACTACATTCCTTATGCTCCCTATTTTTCCCCATTTTATGTCTCACCTCCAGCAATCCACCAATTTATGGGTAATGGTGCATTTCCTCAACAACCACAGGCCGGCACTGTATATCCCCCTCCCCCAGCTGTTGCTCCCACAGGAATGAAATATCCTCTTCCACAATTCAAACCTGGTGCAAATGCAGCAAACCCAACTCACCTTGTAATGCCAAGTGCCTATGGTGTATATGGCTCCTCTGCAGCTGGTTACAATCATAATTCTGCAGCTGCTGCAGGGAATTCAACCTCCAATGAGGATCTTGGTTCCTCTCAGTTCAAGGAAAGCAATGTGTACATCAGTGGACAGCAGAGCGAAGGTTCAGCGGTGTGGATGGCTGCACCTGGCCGAGACATTACCAGTTTGCCCACTAGTACATTCTACAACCTCCCTCCTCAGGGTCAGCATGTGACTTTTGCCCCAACTCAGGCTGGCCATGGCACCTTTGCGGGCATGTATCACCCTGCACAAGCAGTGACGGCGGCAGCAGTTCATCCACTGCTACAACAATCCCAGACATTGGCTGGAGCAGTTGATATGGTAGGACCTGGAGGCAATGTTTATCAGCAGCCTCAGCACTCACAAATCAATTGGCCGAGCAACTACTGA

Predicted protein sequences of Glyma02g38790

Limit To All Plant Sequences

>Glyma02g38790.1   sequence type=predicted peptide   gene model=Glyma02g38790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGAGFRASIPSSVRRTIQNIKEITGNHSEEDVYAMLKECSMDPNETTQKLLLQDTFHEVKRKKDRRKENLNNRESVEPRWRPGTLGRGARGGRGNFSPHNASHDAAGSKNSGTGKDNGTPQATEKVVPPLSASQEKISKEKSSGTSSVPINANGPTSVTSGTTSGTSPSPSSAGTGDRLGPSSCDINNLNSALPSDSSNKVATVASGSGSMLSSSNHPASGPASSSAAHFSSSDPVLVPSDDLWFPGAVGAVGAIRCEVGNLHPPGELRAVSSAENKLTAASETGSSSVQGKIQGKSQGAAKNHVTEMSSTSTVTHSSPSTSRPSSNYSSRSQQLVGPQKAGSNKEWKPKPTNTINQGSGPASASEVLVSVDSTGQLQSASSALNSEEATSKLQRKLEDFHLPQRQHVILPNHIIVPDSEKNKFSFGSLGVALGVNTSYVSGPESEKSSTPVSETSQTVEETVEEQDSSQNAAVISEVGDYPDHPQSPTNGAENLSSSEVDGSSSAIQEHNESKQDTALPSGGHQYSGVLTSPNYSFGFVPPVLGTQLTQFDNSESQTRDASRLPSFIVHQQLDPASYYAQFYRTGADSDGRLSPFSSAGANTKYNGNVTVLPAPTSQSPQEGVVLSTTGPTPLVTQAAGPMQSSIAVTQQPVPVFRPSGVHISHYPPNYIPYAPYFSPFYVSPPAIHQFMGNGAFPQQPQAGTVYPPPPAVAPTGMKYPLPQFKPGANAANPTHLVMPSAYGVYGSSAAGYNHNSAAAAGNSTSNEDLGSSQFKESNVYISGQQSEGSAVWMAAPGRDITSLPTSTFYNLPPQGQHVTFAPTQAGHGTFAGMYHPAQAVTAAAVHPLLQQSQTLAGAVDMVGPGGNVYQQPQHSQINWPSNY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain