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Report for Sequence Feature Glyma02g35443

Feature Type:gene_model
Chromosome:Gm02
Start:40268788
stop:40269581
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g35443
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11840AT Annotation by Michelle Graham. TAIR10: plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470 SoyBaseE_val: 6.00E-46ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051865GO-bp Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR13931Panther UBIQUITINATION FACTOR E4 JGI ISS
PTHR13931:SF9Panther UNCHARACTERIZED JGI ISS
PF04564PFAM U-box domain JGI ISS
UniRef100_B9SDI6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9SDI6_RICCO SoyBaseE_val: 4.00E-78ISS
UniRef100_UPI00023370FFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023370FF related cluster n=1 Tax=unknown RepID=UPI00023370FF SoyBaseE_val: 1.00E-127ISS

Expression Patterns of Glyma02g35443
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g35443 not represented in the dataset
Glyma02g35443 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g35443 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g196300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g35443
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g35443
>Glyma02g35443.1   sequence type=CDS   gene model=Glyma02g35443   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGACCCCGTTACGGCCATAACGGGCATAACATATGATCGTGAAAGCATAGAGCAATGGCTATTCACCAACAAGAACACCACATGCCCCGTGTCCAACCAACCCCTCCCTAGAGACTCTGACCTAACCCCTAACCACACCCTTCGCCGATTGATCCAAGCTTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGGATTCCGACCCCAAAATCCCCTCTCAACAAAATACAAGTCCTTAAACTCCTCAAAGACCTCAATGACCCCAAAAGCCTCTTGCAATTGGAGCTTCTTGCCGCGGAGAGCGAGAGGAACAAAAAGTGCTTGCTAGAGGCTGGTGTGCCAAGGGCCATGATCATGTTCATTGTGAATTGTTATAAAAAGGGTCAAATTCAAAAGGGTCTCGAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAGGGAGGAATGTGCAATTCTCCTAAAGGACAACGATCAAATACTGGATTCTCTAGCATGGCTTCTAAGCCATGACGAAATGGAAAACTCCATAGCCGTGAAATCACACGCGGTTCAAGTGCTAAAAAAATCATCAGCAAGGACGACATGTGTCGCGTTCTCGAGAGGCTCAAACCCTCGTTCTTCGAAACAATGGTGA
Predicted protein sequences of Glyma02g35443
>Glyma02g35443.1   sequence type=predicted peptide   gene model=Glyma02g35443   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDPVTAITGITYDRESIEQWLFTNKNTTCPVSNQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKSPLNKIQVLKLLKDLNDPKSLLQLELLAAESERNKKCLLEAGVPRAMIMFIVNCYKKGQIQKGLEEALSILQFVKIPREECAILLKDNDQILDSLAWLLSHDEMENSIAVKSHAVQVLKKSSARTTCVAFSRGSNPRSSKQW*






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