Glyma02g31110 - SoyBase

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Report for Sequence Feature Glyma02g31110

Feature Type:	gene_model
Chromosome:	Gm02
Start:	33746535
stop:	33755924
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g31110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20860	AT	Annotation by Michelle Graham. TAIR10: NIMA-related kinase 5 \| chr3:7306147-7308434 FORWARD LENGTH=427	SoyBase	E_val: 2.00E-151	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24362	Panther	SERINE/THREONINE-PROTEIN KINASE NEK	JGI		ISS
PTHR24362:SF158	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9SL78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SL78_RICCO	SoyBase	E_val: 5.00E-172	ISS
UniRef100_UPI000233D6B3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D6B3 related cluster n=1 Tax=unknown RepID=UPI000233D6B3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g31110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g31110

Paralog	Evidence	Comments
Glyma10g12361	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g31110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g180100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g31110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g31110

Limit To All Plant Sequences

>Glyma02g31110.2   sequence type=CDS   gene model=Glyma02g31110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATCCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAGAATAAGAGGTATGTGCTGAAGAAAATTCGCTTGGCCAAGCAAGCAGACAAGTCCAAAGTGACAGCACAACAAGAGATGGACCTAATAGCAAAACTACATTACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGATGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCAGAGGAGAAAGTTTGCAAGTGGTTGACTCAGTTGTTACTGGCTGTGGACTACCTTCACTCCAATCGGGTACTCCATAGAGATATCAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGACTTGCAAAGCTTCTTAATACTGAAGACCTTACTTCCCCGGTTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTCGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCATCCATATCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAAGAATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAATAGTAACTCAAAGGATAAAACAAAAACCAAATCTAGTAGTGGTAGCAAAGACCATTGGGAAAGGGAGGCAGCATTGGCTGGATTGGTAAATCGTTTGGATCGACTTTATCCATTAGAGGGAAATGGAGATGTACAGTCACGGAATTGGCATAATGATGGCAAGCTAGCAGTGTCAACCAGTGCAGAAGACAACCTTGAGACTAAAATGGTTGATTTGACCAGCTATACTGTGGAGTTTTCTACTAGTATTAGCGGCTCGAAAGATGGATCAACAACATCTGAATCAACTGTCTGCAGTGTGTGCAAGGAAGGAGACTCTAAAAATAGACTTACAAGGGACACAGCTGACAGTGAGATCACTTCAAAGAGTACAATGGATTCTGGGCTTGAAGAACAAGGACTTGATTGTCACAAGTCATATGCAATTGACATAAATACGGTGATTAATAAAGTTGAAGATACTTTTTCCAATGAAGATTTCAATACAGATGAAGCACTTAGTGAAGGTGTCAAACCTGAGGACTCCAGTAAATCAATAATGTCCAGTGAAGACAGCAACGGTAATGATAAAGATGAGTTAATTGATGAGATCACATCAAAGAGTACTCTAGATTCTGTGCATGAAAAACAAGGATTTACAGCTGAACATTTTCAGAAGTCAGATGTGATTGACACAAGTGCAGTGTCTACAAAGATTGAAGATAATTTTTTCAGTGAAGATAGAACAGAAGCAGAGAGGGAAAATGCCAAACCTGAGGACTCCAGAAAATCAATAGTGTCAAGTGAAAACAGCGATGTTAAGGATAATGAGGGATCCATTAATGAGATCACTTCAACGAGTATGCTAGATTCTGTGCATGAAGAACAAGGATTTACAGCTGAACATTTTCCGAAGTCAGATGGGATTGACACAAATGCAGTGGCTATAAAAGTTGAGGATAATTTTTCCAATGAAGGTTTTGACCAAACAGAAACAGAGAGGGAAAATGCCAAACCTGATGACTCCCGAAAATCAGTAGTTTCCAGTGAAAACAGTGATGGTAATGATAACGATGGGTCCATTGATGAGAACACATTAAAGAGTACGCTCAATTCTGTGCATGAAGAACACGAATTTACCGCTGAACATTTTCTGAAGTCAGATGTGATTGACCCAAATGCAGTGGCTTCAAAAGTTGAAGATAATTTTTCCAATGAAGGTTTTGACCAAACTGAAACAGAGAGGGAAAATGCCAAACCTGATGACTCCAGAAAATCAATAGTGTCCAGTGAAAACAGCGACGGTAATGATATTGTTGCTGTTGATGAGACCACATTAAAGAGTATGCTCAATTATGTGCATGAAGAGCGAGGGTTTACAGCTGAACTTGTTCAAAAGTCAGATGTTGAAATAAATGCAGCGGCTTCAAAAGTTGAAGACAAATTTTCTAATGAAGGATTTGATAAGGCTGAAGCACAGAGGGAAGATGCCAAACTTGAGAGCTCTAGTAAATCAATAATTTCCTGTGAAAACAGAAACGATAATGATGACTATGGATCTGGCTATGAGATCACATCAAACAGTATGCTAGATTCTGTAGGTGAAGAAAAAAGACTTCCTGCTGAACTCTTTCAGAAGTCTGATGCAATTGACATAAATGCAGTGACTACAGAAGATGAAGATAAACTTTCCAAAGAAGGTTTTGATAGAGCTGAAACACAAGAGAAAGATGATAAACCTGAGGACTCCAGTAACTCATTGTCTAGTGAAGACAGCAACAGCAACGATAAAGAGGGGTCCATTGATGAGGAAAGGTCATCACCAATTGCACATGCGGTTAAGGTTGAGCATGACACTGACACTGGAAACAGCTTGAAGGAAAATGAAAACCCTAAAGTGTTGACAGAAGACTCATGCATGGACAGCTTGGCTTCTGAGAGTAATGAAATGCGTCCAGGTAAGGATGAAGGCCAAGCAGATACACACACAATCAGTTGTTCAACGCATAAAGAAGTTGACAATGCTGTCATGGCTGATAAGCCACCAAATGGCGTTTCATTAAGGACACGCATATCAAGAGGTGGTGATAATACTTGCCATCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAGTTATGTGCGCAGCTACTTCAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTGAGACCATTTGGAGAAGATGCTGTATCTGTATCATCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTGGTGGCCTCACAAAATCTTAATCCTGAGATATAG

Predicted protein sequences of Glyma02g31110

Limit To All Plant Sequences

>Glyma02g31110.2   sequence type=predicted peptide   gene model=Glyma02g31110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSGKMEDYEVIQQIGRGALGATFLVLHKIENKRYVLKKIRLAKQADKSKVTAQQEMDLIAKLHYPYIVEYKDAWVEKDDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDIKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPVVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLKNPHLQPYVLRCRNASSIFLPVHLINSNSKDKTKTKSSSGSKDHWEREAALAGLVNRLDRLYPLEGNGDVQSRNWHNDGKLAVSTSAEDNLETKMVDLTSYTVEFSTSISGSKDGSTTSESTVCSVCKEGDSKNRLTRDTADSEITSKSTMDSGLEEQGLDCHKSYAIDINTVINKVEDTFSNEDFNTDEALSEGVKPEDSSKSIMSSEDSNGNDKDELIDEITSKSTLDSVHEKQGFTAEHFQKSDVIDTSAVSTKIEDNFFSEDRTEAERENAKPEDSRKSIVSSENSDVKDNEGSINEITSTSMLDSVHEEQGFTAEHFPKSDGIDTNAVAIKVEDNFSNEGFDQTETERENAKPDDSRKSVVSSENSDGNDNDGSIDENTLKSTLNSVHEEHEFTAEHFLKSDVIDPNAVASKVEDNFSNEGFDQTETERENAKPDDSRKSIVSSENSDGNDIVAVDETTLKSMLNYVHEERGFTAELVQKSDVEINAAASKVEDKFSNEGFDKAEAQREDAKLESSSKSIISCENRNDNDDYGSGYEITSNSMLDSVGEEKRLPAELFQKSDAIDINAVTTEDEDKLSKEGFDRAETQEKDDKPEDSSNSLSSEDSNSNDKEGSIDEERSSPIAHAVKVEHDTDTGNSLKENENPKVLTEDSCMDSLASESNEMRPGKDEGQADTHTISCSTHKEVDNAVMADKPPNGVSLRTRISRGGDNTCHQRADALESLLELCAQLLQQGKLEELAAVLRPFGEDAVSVSSRETAIWLTKSLVASQNLNPEI*

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