Glyma01g42230 - SoyBase

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Report for Sequence Feature Glyma01g42230

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53534536
stop:	53536750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45430	AT	Annotation by Michelle Graham. TAIR10: AT-hook motif nuclear-localized protein 22 \| chr2:18727848-18728801 FORWARD LENGTH=317	SoyBase	E_val: 3.00E-81	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009647	GO-bp	Annotation by Michelle Graham. GO Biological Process: skotomorphogenesis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010359	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003680	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AT DNA binding	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9RBV3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ESC, putative n=1 Tax=Ricinus communis RepID=B9RBV3_RICCO	SoyBase	E_val: 4.00E-116	ISS
UniRef100_I1J9Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9Z9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g42230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g42230

Paralog	Evidence	Comments
Glyma11g03130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g42230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g213100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g42230

Limit To All Plant Sequences

>Glyma01g42230.1   sequence type=CDS   gene model=Glyma01g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTATTACAGCACACGGTCATTCTCTTCCCCCTCCTTTCCACGCAGGAAGAGATCTCCACCTCCACCAGCAACAACACCAGTTCCACTCCTTACAAGAAGACGAGCAGAGCGGAAGCAGCGGAGGCCTAAACCTCGCACACAAAAGGGAACACGAAGAAAACAACAACAACAACAGCAGCGATGGCAAAGAAGGTGGAGGTGCTGGCTCCGGCGAAACCGAAATTTCAAGAAGACCTCGCGGAAGACCCGCCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACGCGCGACAGCGCCAACGCCCTCAAAACCCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGATAGCGTCTCCGCCTTCGCCCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACCGGAACGGTCACCAACGTCACCCTGAGGCAACCGGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGAAGGTTCGAGATCTTGTCCCTCGCCGGGTCCTTCCTGCCCCCTCCTGCGCCGCCTGCAGCCTCCGGTTTGACCATATACCTCGCCGGAGGACAAGGCCAAGTCGTCGGAGGAAGCGTGGTTGGCGCACTAATCGCTTCGGGGCCCGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAAGACCCTTCGATGGCGCTTCAGGGAGGTGGTTCGATTGGGTCACCGGGAGGTGGCGGTGGAGGTGGCGGTGGCGTTGGTCAACAGCAGCCATCTCAGCAGCTTATGGGGGATTCCACTGCGCCTCTTTTCCATGGTTTGAATCCCAATCTTCTGAATTCGGTTCAGATGCCGTCCGAGACTTTCTGGGCAACGGGTCGCTCTCCATACTGA

Predicted protein sequences of Glyma01g42230

Limit To All Plant Sequences

>Glyma01g42230.1   sequence type=predicted peptide   gene model=Glyma01g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPITAHGHSLPPPFHAGRDLHLHQQQHQFHSLQEDEQSGSSGGLNLAHKREHEENNNNNSSDGKEGGGAGSGETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSAFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMALQGGGSIGSPGGGGGGGGGVGQQQPSQQLMGDSTAPLFHGLNPNLLNSVQMPSETFWATGRSPY*

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