Glyma01g41590 - SoyBase

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Report for Sequence Feature Glyma01g41590

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53048512
stop:	53055077
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39810	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-protein ligases \| chr2:16612941-16617802 FORWARD LENGTH=927	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR10044	Panther	INHIBITOR OF APOPTOSIS	JGI		ISS
PTHR10044:SF81	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7JXE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase HOS1 n=1 Tax=Medicago truncatula RepID=G7JXE3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J9T6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9T6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41590

Paralog	Evidence	Comments
Glyma11g03840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g207400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g41590

Limit To All Plant Sequences

>Glyma01g41590.1   sequence type=CDS   gene model=Glyma01g41590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAGAGGCTCAATGGACCCACCGTTTCGTCCAGCTCTAACGGCGGCTCCGCCGTGGGACGATCTTCTCCTACGCTTCAACCAAACTACAGTAGCCGATTAGTTCAGGAAGCATTGGAACACTTGGCATCCATTGATCTGATTGAGTTGTGCAAAGAAGCCAAAGTTGAGCGCTGCCGAGCAACTCGAGACTTGAGAAGCTGTGGTCGCTATGTCCACCATGTCTTGAATTCATGCGGACATGCCTCTTTATGTGAAGAATGTAGCCAACGGTGTGATATCTGCCCAATTTGTAGAATCCCAATTTCAAAAAGTGGTGCTAAAGTGCATCTTCGACTTTATTATGAATGCATAGAAGCAGGCCTTATTTCGAAAAGGTGTGATGAGAGGTTTCAAGAAATAGAAGATGGGGACAAACAACTAACTGCTGACGTACAGCGCCTTTATTCTCTGTTTGACGTTGCACTTGAGAATAACTTGGTTTCTTTAATTTGCCACTACATCACAGATGTATGTATGGATGAAACTGCTGTTTCCAGTGATCCTGTCATTGCATTTTTGTTGGATGAAGTGGTAGTGAAGGATTGGTGCAAGAGGACATTCAAAAACATCATTGCTGAACTGCAGGGAATTTATAATATGGACATTTTAGGCTTGAAAGAGAGATTGAGTTTACTTCTGAAATTTTCATTATACTTGAAGGGCATATCAAATGTGCTAGACATTTTGGAGTCATCTTTTAAGGGTACTCTTTCAGCACAACTTCACGATTTGCAGAATCTCCAAGAGAGCATCATGAAGACAAAGCAGCATATGGATGTTATTATTTGGTGTACGAGACATCAATTTTTGGAAGATGTGAGATCACGTTTTACTGATAGTTCGTCATGGTCATCAGTTGTTCGGACAAGGAAATCAGAAGCAATTAGACGTGCTTGGCCTGATCCAATAAATCAATCTGTGGAGTCATCAGGACATGATGGGTCTCTATTTATTGAAGATGCAATGAATAATCTTGATCTGGAGGAGGGGTTTAGGAATGAAATTGTAGAGGGATTGGAAATTGCATCCTTGCAGAAGGACAGTGAATCATTTTTGGGGTCAAATACTGATCAGATTCTGGGTTACTATCCCTTCAAAAATCTTCGTTCTGCTGTTGACTTGCTCTTTTTACGTGGAGGCTCTGATATGGTGATTGCAAAACAGGCCATTTTTCTGTATTATTTATATGATCGCCACTGGACAATTCCTGAAGAAGAATGGAGATACATACTTGAGGACTTTGCTGCTACATTTAGTATTAGCAGGCACTCATTACTTGAATCTTTGACTTTTTACCTTCTGGATGATCACACAGAGGAGGCTTTACAGGAAGCTTGTCGCCTTCTTCCTGAAATAACTGGCTCAACATCACATCCTAAAATTGCTGAAGTACTATTAGAAAGGGGTAGCCCTGATACAGCTCTCATGGTTTTGAGGTGGGCTGGGCGGGATGGTGGACCTCACGTGACTTCACTCAGAGATGCTGTCACTGCAGTGCGGGTGAGGGTTGAGTGTGGGCTTCTGACTGAAGCATTTATGCATCAGAGAATGCTCTGCACCAAAGTGAAGGAAAAGAATTTCAATAAAACAGCATCTGGGAATACTTCTGAGAAGCAAAAAGGTCAATGTAATAAGTGGGTGGAGTGGATGGAGGTCCTGGTGACTGAGATTTGTTGCCTCTGTATTAGGAGGAACTTGGTGGATCGAATGCTAGAATTGCCATGGAATTCTGAGGAAGAGAAGTATATACATAAATGTCTTTTGGATTATGCTATTGAAGACCCTTTAAGGACAACAGGAAATCTACTTGTTGTGTATTATTTTCAGCGCCACAGATACTCTGAAGCATATCAAGTTCATATTAAACTTGAAAAGGCGGAGCAAGATTGCATTTCAAAAGGTTCCGTAAGTCAACAAAATCTGCCAGTATTAGAGAAGGCTATTCACTTCAGAGCCAATTTGATTAATAGATGCTTGGAATTGTTGCCAGAAGTTGAGCAGCAGCAACTGAGGAGCGGAAACTTGACTGAAGGTGTTGTTACTTCTTGTGAAGAAGTTGAAATTCCTGACAAATTTGACGTTCCTCAGATTCAGGATTTCTTGTCAACCAGTTTATTGATTCCTTCATCTGTAAATTCTTCCTTGATGTTGCATAAAGATCATCCAACTGGCTTGTTGAGTTCATTGACTTTAGGAACATCAGCCAAAATAGGCATGTCTTTCCCTACTACTGGCACTGAGCTAGGTAATTTTGGTTCCTTATCATACCATCATGATGGGTTATTTACAAATAATGAGAGGGTTCCAAGTCATCAACGTAAAATTGGTAAAAATCTAAGAAATGATAACTCTCCAACTCCTAGGAATCATAGGATCCGTTTCATGAATGGTTCACCCCTGAAGGGATTTACCAGGACATCACCAAGCAATTCCCAGGAGAATAGGCCGGACAAAATCTCGCCTGGAGTTGAACAAAATAATCAAACTACCAGTCCTATGGAATCCTGGAAGGCTACAGTTAACCCTGTTACTAGATCCACACTTAGCTATCCTAAAGAATTTGCAAATGATCTCTCAAATGTATCTAGTAAGAATGTCCAATCACATAAAGATGAAAGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCGGAGCCTTGTAGATAATAAATTAAATACTGAAGAAAACATCAAGGGTGCACCTAGATGGAGATCTGATGATGCGAGTGATGAGGAAGATGATCGGGATGTGGGAAGAGCAATGGATATAGCTTATTATTCAACTCCTCCAACTCAGATGACAAGACGAAGCAGAGTTTCCAGGAGATGA

Predicted protein sequences of Glyma01g41590

Limit To All Plant Sequences

>Glyma01g41590.1   sequence type=predicted peptide   gene model=Glyma01g41590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKRLNGPTVSSSSNGGSAVGRSSPTLQPNYSSRLVQEALEHLASIDLIELCKEAKVERCRATRDLRSCGRYVHHVLNSCGHASLCEECSQRCDICPICRIPISKSGAKVHLRLYYECIEAGLISKRCDERFQEIEDGDKQLTADVQRLYSLFDVALENNLVSLICHYITDVCMDETAVSSDPVIAFLLDEVVVKDWCKRTFKNIIAELQGIYNMDILGLKERLSLLLKFSLYLKGISNVLDILESSFKGTLSAQLHDLQNLQESIMKTKQHMDVIIWCTRHQFLEDVRSRFTDSSSWSSVVRTRKSEAIRRAWPDPINQSVESSGHDGSLFIEDAMNNLDLEEGFRNEIVEGLEIASLQKDSESFLGSNTDQILGYYPFKNLRSAVDLLFLRGGSDMVIAKQAIFLYYLYDRHWTIPEEEWRYILEDFAATFSISRHSLLESLTFYLLDDHTEEALQEACRLLPEITGSTSHPKIAEVLLERGSPDTALMVLRWAGRDGGPHVTSLRDAVTAVRVRVECGLLTEAFMHQRMLCTKVKEKNFNKTASGNTSEKQKGQCNKWVEWMEVLVTEICCLCIRRNLVDRMLELPWNSEEEKYIHKCLLDYAIEDPLRTTGNLLVVYYFQRHRYSEAYQVHIKLEKAEQDCISKGSVSQQNLPVLEKAIHFRANLINRCLELLPEVEQQQLRSGNLTEGVVTSCEEVEIPDKFDVPQIQDFLSTSLLIPSSVNSSLMLHKDHPTGLLSSLTLGTSAKIGMSFPTTGTELGNFGSLSYHHDGLFTNNERVPSHQRKIGKNLRNDNSPTPRNHRIRFMNGSPLKGFTRTSPSNSQENRPDKISPGVEQNNQTTSPMESWKATVNPVTRSTLSYPKEFANDLSNVSSKNVQSHKDERSWNMGSTNDPMDVSRSLVDNKLNTEENIKGAPRWRSDDASDEEDDRDVGRAMDIAYYSTPPTQMTRRSRVSRR*

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