Report for Sequence Feature Glyma01g40531
Feature Type: gene_model
Chromosome: Gm01
Start: 52248257
stop: 52250234
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g40531
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G67020 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26749962-26751146 FORWARD LENGTH=394
SoyBase E_val: 4.00E-39 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1J9H9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J9H9_SOYBN
SoyBase E_val: 7.00E-151 ISS
UniRef100_UPI00016C38A2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: hypothetical protein GobsU_23777 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38A2
SoyBase E_val: 4.00E-23 ISS
Expression Patterns of Glyma01g40531
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g40531
Paralog Evidence Comments
Glyma11g04774 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g40531 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g197300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g40531
Coding sequences of Glyma01g40531
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g40531.1 sequence type=CDS gene model=Glyma01g40531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCATGGCCACGGGCACCCTTGACCACAAAGCGAAATCGAAACCTCCAAGGCCGAAGAAGCGAATATGTTTTTCATTCGCAGCGTACGCCAGCGACCTCCTTAATTGCCTCAAAGCCTCGAAGGTGGTAATCGACGAAGGACTCTCCGACGCAGAATTCTCAAACATCGAATCCAAATTGAAATTCTCCTTCCCACCGGACCTACGCGCGATCCTCCAACAAGGCCTTCCCGTTTCCCAAGGCTTCCCCAATTGGCGTTCCTCATCGACACAGCAACTCCAAATTCTCCTCAACCTCCCCGCCTCATCGATTCTGCGTCGCGTCTCCAACGGGCCCTTCTGGCCACCTTCGTGGGGTCCAGCACCGCCCGACCCGACCCGACTCATTGCCCGATTGTTGCATGATGCACCGCCGCTCGTTCCGATTTACCGCCATTGTTACATTCCCTCCTCCCCCGACGCGGCCGGGAACCCTGTTTTTTACGTCGACAACGAAGGTGATGTTCGCTTGCTGAGCTTTGATGTGGCGGGGTTTTTTCGGGAGTTTCTGGCGCGGGGGCCGGAGGAGCCGGTGTGGGCGGCAAAGGAGGCGAGGAGGGTGAGGTTCTGGTCGGAGGTGGCGAACGGGCGGTGCGGGGGGTGGTGGTGGTGGGGCGGCGAGAAGGGGGAGCTGGGAGGGTGTCTGGAGAGATTGGTGTGGAAATTACGCGAGGGAGGGTGGACGGAAGAGGAGATAGGGGAGATGATGGCGGTGGAAGAAGAGAACAAGTTGAAATTCAATGACAAAGAGGCAATGGCGTGGCACGTCAGAGTGTTGTCCTTGGTTTTGCTGCGTGGGGGATGGAACAGGGAGGATGTGGTCTATTCCCTGGGTGTCGTTGCTCATCAAGATCAACTCAACGCCTTCTAA
Predicted protein sequences of Glyma01g40531
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g40531.1 sequence type=predicted peptide gene model=Glyma01g40531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAMATGTLDHKAKSKPPRPKKRICFSFAAYASDLLNCLKASKVVIDEGLSDAEFSNIESKLKFSFPPDLRAILQQGLPVSQGFPNWRSSSTQQLQILLNLPASSILRRVSNGPFWPPSWGPAPPDPTRLIARLLHDAPPLVPIYRHCYIPSSPDAAGNPVFYVDNEGDVRLLSFDVAGFFREFLARGPEEPVWAAKEARRVRFWSEVANGRCGGWWWWGGEKGELGGCLERLVWKLREGGWTEEEIGEMMAVEEENKLKFNDKEAMAWHVRVLSLVLLRGGWNREDVVYSLGVVAHQDQLNAF*
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