Glyma01g24850 - SoyBase

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Report for Sequence Feature Glyma01g24850

Feature Type:	gene_model
Chromosome:	Gm01
Start:	32687319
stop:	32692418
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g24850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37730	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF604) \| chr2:15822186-15824538 REVERSE LENGTH=532	SoyBase	E_val: 6.00E-165	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG2246	KOG	Galactosyltransferases	JGI		ISS
PTHR10811	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE RADICAL FRINGE	JGI		ISS
PTHR10811:SF5	Panther	RADICAL FRINGE	JGI		ISS
PF04646	PFAM	Protein of unknown function, DUF604	JGI		ISS
UniRef100_I1J6Y8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J6Y8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q941F0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g23490/F16G20_190 n=1 Tax=Arabidopsis thaliana RepID=Q941F0_ARATH	SoyBase	E_val: 2.00E-116	ISS

Expression Patterns of Glyma01g24850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g102100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g24850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g24850

Limit To All Plant Sequences

>Glyma01g24850.2   sequence type=CDS   gene model=Glyma01g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCTAGCTTCTTCCTTTCTAAAAGTTCACCAATACTATCTCACTAAGGCATGGAAAACCCTTGCCTTTCCAACCATCAAACTCACCAACCTCCTTTCCCTCTTCCTCAAAACTAGCCTTGCCCTATGCACTTGCTTTATCATCTCCCTCTTCTTTTACCTCTCTCTCTCTCTCTACCATCATAATTACAACTACTCACCATTTCAACACCCTTACCATTTCATAATCTCACACGATCCATCCACCTTTGAAAACAACAATGAACCAACCAATATTTCCCACATTGTGTTTGGCATGGGTGGTTCTGCCAAGTCTTGGCAGGACCATCGACACTACACCGAAGTCTGGTGGCAGCCGAATGTCACTAGAGGCTTTATGTGGTTGGAACAGGAACCTCTAGTTCTAGCCAAAGAGACGTGGCCGGAGACTTTACCGCCATATAAAGTCTCTGGTGTCACATCATCATTCATGTACACGAATAAGGTAGGGTTGCAATTTGCAATCCACTTGGCACGAATTCTAAAGGAGACTTTCCAGTTAGGGCTAGAAAACGTGAGGTGGTTTGTGATGGGAGACAATGACACTGTATTTTTCACGGAGAACCTAGTCACTGTGCTTGCGAAATACGATCATAATGAAATGTACTATATTGAAGACAACTCAGAGAGCGTGGAACAAAACGTGGCACAAACCTATGGCATGGCTTTTGGTGGTGGTGGGTTTGCCATAAGCTACCCTTTGGCAGAAGTGCTAGTGAAGATTTTGGATGGATGCATTAATCGCTATGCTGTGTTGTTTGGCTCTGATCAAAAGGTTCACGCATGCATGAGTGAGATTGGTGTTCAACTCACCAAAGAGCCTGGTTTTCATCAGACTGACGGGCTTCTCGCGGCGAACCCAATAGCGCCACTTGTGTCACTACACCACCTCCATGCTTCAGAGCCATTGTTTCGAGACACAGGTCGGGTCGAGTCCTTAAAAAGGTTTGTATCCGCATATAAAATGGATCCAGGTCGAATCCTCCAGAAGAGCATATGCTATGACCCGAATCGGAATTGGACATTCTCAGTGTCTTGGGGCTACAATGTGGAGTTGTACCGTTCTTTAGAGACGTCCATTGAGTTGCAAACAACGTTTAAGACTTTTCAAACATGGCGTGGGTATGAGGACCCGTTCACATTCAATACCCGACCCGTTATCCCCGACCAGTGTAAGAGGCCCGTGGTGTTCTTCTTGGATCAGATCGAAGATGGGGGACTCGGGGAATGGACTGAATCCTCGTATAAGATATATGACAATGTTTTGCTCGAGAAGTCTAATTGTTCTCTGGAAGTTCAATATGTCAATGTCACTGCCTCATACTTTAGGCCTGAGCTGTGGAAAAAGGCACCACGTAGACAATGCTGCGACATAATCAAAGGCACAGATGAAGGGAGCAATGTGGTCGAAATCGTGATCAGAGGCTGTCATCAATTTGAGAGTGTCACTCCTCCTTAA

Predicted protein sequences of Glyma01g24850

Limit To All Plant Sequences

>Glyma01g24850.2   sequence type=predicted peptide   gene model=Glyma01g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLASSFLKVHQYYLTKAWKTLAFPTIKLTNLLSLFLKTSLALCTCFIISLFFYLSLSLYHHNYNYSPFQHPYHFIISHDPSTFENNNEPTNISHIVFGMGGSAKSWQDHRHYTEVWWQPNVTRGFMWLEQEPLVLAKETWPETLPPYKVSGVTSSFMYTNKVGLQFAIHLARILKETFQLGLENVRWFVMGDNDTVFFTENLVTVLAKYDHNEMYYIEDNSESVEQNVAQTYGMAFGGGGFAISYPLAEVLVKILDGCINRYAVLFGSDQKVHACMSEIGVQLTKEPGFHQTDGLLAANPIAPLVSLHHLHASEPLFRDTGRVESLKRFVSAYKMDPGRILQKSICYDPNRNWTFSVSWGYNVELYRSLETSIELQTTFKTFQTWRGYEDPFTFNTRPVIPDQCKRPVVFFLDQIEDGGLGEWTESSYKIYDNVLLEKSNCSLEVQYVNVTASYFRPELWKKAPRRQCCDIIKGTDEGSNVVEIVIRGCHQFESVTPP*

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