Glyma01g04630 - SoyBase

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Report for Sequence Feature Glyma01g04630

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4267487
stop:	4273671
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59650	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1336) \| chr1:21920099-21922670 FORWARD LENGTH=492	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07059	PFAM	Protein of unknown function (DUF1336)	JGI		ISS
UniRef100_I1J5H8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5H8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SLT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CW14 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SLT5_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04630

Paralog	Evidence	Comments
Glyma02g02920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g039500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04630

Limit To All Plant Sequences

>Glyma01g04630.1   sequence type=CDS   gene model=Glyma01g04630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGCGTGTGTTTCAACTCCACAAGGTTGCGTGGGAGGGAGGTTGAGCTCTTCCAAGAAGAAAACCAGGAAGAGGAGGAGAGAGGGACTCAGAAGAAGAGTTACTTCTCGGTTGTGTAAGGAATCATTGGAGAAAATTGATGTGGCAGGGTTGCCTGATTGTTCCTTTGCCAATCCCACTTTCCAAGGAAGTATTGAAGAGGCATGGTTTGATTCGGTTGCAGTATTTGACTCTGACTGTGATGATGATTATCAGAGTGTTCCTGATGATGTTGTATCTCTGAGTGGGATTGAAGGTGGATCTGTATCAAGTTTTCCATCTTCAGGAGATGCCAACCATGGAGTTTCCACAGATCATGTTCAGAAACAGAAGGAGTTGTTGGCAGGATCCGAAGCAGCCAGAAGTTCAGATGTCCAATATTTTGTGGTAGATGCCATTGATTCTCAACATGAGCCCGTGTTCCTTGATGAAATTTCCTCAGTGGACGCGAACTCCAACAAGGATGATGGACTTTTGGATAATTGTGGGATTCTTCCGAACAATTGTTTGCCATGTCTTGTATCTACCATTCCTTCTGTTGAGAAGAGAAGATCAACAAGTTCTAGTCCTCCTAATGCAAGGAAGAAGCCTACAACAAAACTTTCCTTTAAATGGAAAGAAGGACATGGGAATGCTACTCTATTTTCCTCAAAGATGCTTCTACAAAGACCAATTGCTGGTTCTCAAGTGCCGTTTTGTCCAATTGAGAAGAAAATGCTTGATTGTTGGTCACAAATTGATGCAAGCACTTTCAAAGTTCGAGGAGTAAATTATTTCAAGGACAAGAAAAAGGACTTTGCTCCTAATTATCCTGCATATTACCCATTTGGTGTAGATGTTTTCTTGTCTCCACGGAAAGTTGACCATATAGCTCGGTTTGTGGAACTTCCTGTTATGAGTTCCTCCGCGAAATTTCCTCCCATACTAGTTGTAAACGTTCAGGTTCCACTCTATCCTGCCACACTTTTTCAAGGAGAAACTGATGGTGAAGGAATGAGCATTGTTTTGTACTTTAAACTTTCGGAAAGTTACTCCAAGGAACTTCCACAGACTTTTCAAGAAAGCATCAGAAGATTGATGGATGATGAAGTTGAAAAGGTAAAGGGTTTTCCTGTAGATACAATTGCACCCTTCAGGGAAAGGTTGAAAATATTAGGCCGTGTCATCAACCTGGAAGATCTTCATTTGAGTGCTGCAGAAAGGAAGCTTATGCAGGCTTACAATGAGAAACCTGTTCTTTCGCGTCCCCAACATGAGTTTTACATGGGGGAAAATTACTTTGAGATTGATTTGGATATGCATAGATTCAGTTATATCTCCAGGAAAGGGTTTGAAGCTTTCTTGGACAGATTAAAGGTTTGCACTCTAGATGTTGGCCTCACAATTCAGGGGAACAAACAGGAGGAGCTACCAGAGCATGTGTTATGTTGTATTAGATTAAACGGCATTGACTACATGAATTACCAACAACTGGGGCTAACTCAGGACCCCCTCTAA

Predicted protein sequences of Glyma01g04630

Limit To All Plant Sequences

>Glyma01g04630.1   sequence type=predicted peptide   gene model=Glyma01g04630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGACVSTPQGCVGGRLSSSKKKTRKRRREGLRRRVTSRLCKESLEKIDVAGLPDCSFANPTFQGSIEEAWFDSVAVFDSDCDDDYQSVPDDVVSLSGIEGGSVSSFPSSGDANHGVSTDHVQKQKELLAGSEAARSSDVQYFVVDAIDSQHEPVFLDEISSVDANSNKDDGLLDNCGILPNNCLPCLVSTIPSVEKRRSTSSSPPNARKKPTTKLSFKWKEGHGNATLFSSKMLLQRPIAGSQVPFCPIEKKMLDCWSQIDASTFKVRGVNYFKDKKKDFAPNYPAYYPFGVDVFLSPRKVDHIARFVELPVMSSSAKFPPILVVNVQVPLYPATLFQGETDGEGMSIVLYFKLSESYSKELPQTFQESIRRLMDDEVEKVKGFPVDTIAPFRERLKILGRVINLEDLHLSAAERKLMQAYNEKPVLSRPQHEFYMGENYFEIDLDMHRFSYISRKGFEAFLDRLKVCTLDVGLTIQGNKQEELPEHVLCCIRLNGIDYMNYQQLGLTQDPL*

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