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Report for Sequence Feature Glyma.20g196000

Feature Type:gene_model
Chromosome:Gm20
Start:43417366
stop:43419210
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g196000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54010.1AT UDP-Glycosyltransferase superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0043231GO-cc intracellular membrane-bounded organelle EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups JGI N/AIEA
GO:0080043GO-mf quercetin 3-O-glucosyltransferase activity EnsemblGenomesN/AIEA
GO:0080044GO-mf quercetin 7-O-glucosyltransferase activity EnsemblGenomesN/AIEA
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI N/AIEA
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI N/AIEA
PTHR11926:SF77Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI N/AIEA
PWY-5125SoyCyc9 anthocyanin biosynthesis Plant Metabolic Network ISS
PWY-7267SoyCyc9 anthocyanin biosynthesis (pelargonidin 3-O-glucoside) Plant Metabolic Network ISS
PWY-7450SoyCyc9 anthocyanidin modification (Arabidopsis) Plant Metabolic Network ISS
GN7V-60281SoyCyc9-rxn anthocyanidin 3-O-glucosyltransferase Plant Metabolic Network ISS

Proteins Associated with Glyma.20g196000
LocusGene SymbolProtein Name
FG1 anthocyanidin 3-O-glucosyltransferase-like
F3G6''Gt anthocyanidin 3-O-glucosyltransferase-like
UF3GT anthocyanidin 3-O-glucosyltransferase-like
FG1 flavonol-3-O-glucoside/galactoside (1->6) glucosyltransferase

Expression Patterns of Glyma.20g196000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g196000
ParalogEvidenceComments
Glyma.10g194000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g196000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g33810 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g196000
>Glyma.20g196000.1 sequence-type=CDS polypeptide=Glyma.20g196000.1.p locus=Glyma.20g196000 ID=Glyma.20g196000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTGTGAAGTTGTGAACAATGATGAGCTTCATGTGGTTATGTTCCCATTCCTTGCATTTGGTCACATTAACGCATTTGTTCAACTCTCCAACAAGTTGTTCTCTCATGGAGTTCGTATCACTTTCTTGTCAGCTGCATCCAACATTCCCAGAATCAAATCAACTCTTAATCTCAATCCAGCCATCAATGTTATCCCACTATACTTCCCAAATGGCATAACCAGCACTGCTGAATTGCCACCAAACTTGGCTGCAAATCTCATACATGCACTTGACCTTACTCAACCTCATGTAAAGTCCCTTTTGTTGGAACTCAAACCCCATTATGTTTTCTTTGACTTTGCACAAAACTGGCTCCCAAAACTAGCTTCTGAACTTGGCATCAAATCTGTTCGCTTTGCGTCCTTCTCTGCCATATCTGATTCTTACATTACTGTGCCTTCAAGGCTTGCTGATATTGAAGGAAGAAACATCACTTTTGAGGATCTTAAAAAGCCTCCACCAGGGTATCCTCAAAACTCCAACATTTCCCTCAAGGCCTTTGAGGCCATGGACTTGATGTTCCTCTTCAAAAGATTTGGTGAAAAAAACTTTACTGGTTATGAGCGAGTTTTGCAAGGCTTTAGTGACTGCTCATTAATAGTGTTTAGATCGTGCAAGGAAATAGAAGAATCCTACTTAGACTACATTGAAAAGCAATTTGGGAAACTGGTTTTGTTAACTGGTTTCCTTGTCCCAGAGCCATCAATGGATGTGCTAGAGGAAAAGTGGTCCAAATGGTTAGACAGTTTCCCTGCCAAATCTGTCATACTATGCTCCTTTGGCAGTGAGCAATTTCTGAATGATGATCAAATCAAAGAAGTGGCCAGTGGCTTAGAACTCAGTGGCTTACCTTTCATTTTGGTTCTGAATTTCCCATCCAATCTCTCTGCCAAAGCTGAGTTAGAGAGAGCATTACCAAAAGGGTTTTTGGAAAGAGTGAAGAATAGGGGAGTGGTGCACACTGGTTGGTTTCAGCAGCAGCTTGTACTGAAACACTCTAGCGTGGGATGCCATTTAGGCCATGGTGGCTTCAATTCTGTGATTGAAGCTCTGGCCAGTGATTGTGAACTGGTGCTGTTGCCTTTCAAGGCTGACCAGTTTTTCAATGCTAAGCTCATAGCCAAGGCTTTGGAGGCAGGGATAGAGGTGAATAGGAGTGAAGATGGGGACTTTAAGAAAGAGGATATACTGAAGGCAGTAAAAACTATCATGGTGGAGGATGATAAAGAGCCAGGGAAGCAAATAAAAGAAAACCACATGAAATGGAAGGAGTTTTTATTGAATAAAGGAATTCAGAACAAATTCATCACTGATCTGGTTGCCCAGTTGAAGTCTATGGCTTAG
Predicted protein sequences of Glyma.20g196000
>Glyma.20g196000.1.p sequence-type=predicted peptide transcript=Glyma.20g196000.1 locus=Glyma.20g196000 ID=Glyma.20g196000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCEVVNNDELHVVMFPFLAFGHINAFVQLSNKLFSHGVRITFLSAASNIPRIKSTLNLNPAINVIPLYFPNGITSTAELPPNLAANLIHALDLTQPHVKSLLLELKPHYVFFDFAQNWLPKLASELGIKSVRFASFSAISDSYITVPSRLADIEGRNITFEDLKKPPPGYPQNSNISLKAFEAMDLMFLFKRFGEKNFTGYERVLQGFSDCSLIVFRSCKEIEESYLDYIEKQFGKLVLLTGFLVPEPSMDVLEEKWSKWLDSFPAKSVILCSFGSEQFLNDDQIKEVASGLELSGLPFILVLNFPSNLSAKAELERALPKGFLERVKNRGVVHTGWFQQQLVLKHSSVGCHLGHGGFNSVIEALASDCELVLLPFKADQFFNAKLIAKALEAGIEVNRSEDGDFKKEDILKAVKTIMVEDDKEPGKQIKENHMKWKEFLLNKGIQNKFITDLVAQLKSMA*






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