Report for Sequence Feature Glyma.20g116200
Feature Type: gene_model
Chromosome: Gm20
Start: 35827672
stop: 35830107
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.20g116200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G68480.1 AT
C2H2 and C2HC zinc fingers superfamily protein
JGI N/A IEA
GO:0007275 GO-bp
multicellular organism development
EnsemblGenomes N/A IEA
GO:0010094 GO-bp
specification of carpel identity
EnsemblGenomes N/A IEA
GO:0010097 GO-bp
specification of stamen identity
EnsemblGenomes N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0003676 GO-mf
nucleic acid binding
EnsemblGenomes N/A IEA
Proteins Associated with Glyma.20g116200
Locus Gene Symbol Protein Name
Ln JAG1 JAGGED gene 1
Ln Ln Narrow leaflets
LN zinc finger protein JAGGED
Expression Patterns of Glyma.20g116200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.20g116200
Paralog Evidence Comments
Glyma.10g273800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.20g116200 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma20g25000 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.20g116200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.20g116200.2 sequence-type=transcript locus=Glyma.20g116200 ID=Glyma.20g116200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCATACCAATATATATATATATGCACGCTGAAATATCAAAGGAACACTTTTTTTTTCTTTCTATTTACCGAATTCTATTTCACAATCACACACCACCATGGGAAGCCTTTCACTTTTCACAGGAAACAAAGTTGAACACTGCCCGTGGTTTGTTACCCATCCCTGTGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATgccaccatccccgccaccgccgccgccaccgcaacGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAAAGAGATGAGAGATTCTTTGTTTGAGTGGTTTTTGGTttgtgttatgtttctgttatgttatgtGGTATCATCATAAAGACACGCAATCCAGAGAGAGAGAGAGGTGGTTTTTGGTTTATCTACAGTAACCAGGGACAGCTTTTGAGCTCATGGACACGCTCAGCTACTTTGGCTTGGAGTTGTGGGTGGGATTTCTTCTCAACATCGCCTTTTGTATTGGTAGCTAGCTAGCTAGCTTGGACAACCAGTTAGATTTGAACTGAAACTTTCCAAACTCCTTTTCCTTTGCATGCCAAATTACAACCATTTTCCTTCTCAGTAATTTGTTCTTTCAA
Coding sequences of Glyma.20g116200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.20g116200.1 sequence-type=CDS polypeptide=Glyma.20g116200.1.p locus=Glyma.20g116200 ID=Glyma.20g116200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACCAGAACGAAACCCCTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCATCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA
>Glyma.20g116200.2 sequence-type=CDS polypeptide=Glyma.20g116200.2.p locus=Glyma.20g116200 ID=Glyma.20g116200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGCCTTTCACTTTTCACAGGAAACAAAGTTGAACACTGCCCGTGGTTTGTTACCCATCCCTGTGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA
Predicted protein sequences of Glyma.20g116200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.20g116200.1.p sequence-type=predicted peptide transcript=Glyma.20g116200.1 locus=Glyma.20g116200 ID=Glyma.20g116200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPERNPLDLNNLPDEYSRDGKQVLEDHTSSSGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRCDHNIAAQGAPHLGCCQTIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPSPPPPPPPQRPYLYPSPTRPVSFGSSHFPLQHAVNDYYVGHVMSGGSHGHYVGGESTRSYTCIGAPVGQGGGFAGGKEGSAVQEEGLSTWGRGYSGAQDRLDPPSAINRFQDGF*
>Glyma.20g116200.2.p sequence-type=predicted peptide transcript=Glyma.20g116200.2 locus=Glyma.20g116200 ID=Glyma.20g116200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSLSLFTGNKVEHCPWFVTHPCGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRCDHNIAAQGAPHLGCCQTIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPSPPPPPPPQRPYLYPSPTRPVSFGSSHFPLQHAVNDYYVGHVMSGGSHGHYVGGESTRSYTCIGAPVGQGGGFAGGKEGSAVQEEGLSTWGRGYSGAQDRLDPPSAINRFQDGF*