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Report for Sequence Feature Glyma.18g132500

Feature Type:gene_model
Chromosome:Gm18
Start:18646384
stop:18652078
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g132500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13750.1AT Purple acid phosphatases superfamily protein JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0003993GO-mf acid phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1378 KOG Purple acid phosphatase JGI N/AIEA
PTHR22953Panther ACID PHOSPHATASE RELATED JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA

Proteins Associated with Glyma.18g132500
LocusGene SymbolProtein Name
PAP1 PAP1, probable inactive purple acid phosphatase 1

Expression Patterns of Glyma.18g132500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g132500 not represented in the dataset
Glyma.18g132500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g132500
ParalogEvidenceComments
Glyma.08g291600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g132500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g17541 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g132500
>Glyma.18g132500.1 sequence-type=CDS polypeptide=Glyma.18g132500.1.p locus=Glyma.18g132500 ID=Glyma.18g132500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGACGAATGGGATGGGGAAGTCAAGAGTGCTATTTTTCTCTATGCTTGTTCTTGCAACCTTTCAGAAAGCAGTCTCAGAAGAGCACCAACCCCTTTCAAAAGTTGCCATTCATAAAACAACACTTGCTCTTGATGAACGTGCTTTTATCAAAGCCACTCCTAATGTCCTTGGCTTGAAGGGACAAAATACAGAATGGGTTACACTGCAATATAGTAATCCAAAACCCACAGTAGATGATTGGATTGGAGTGTTTTCTCCTGCAAACTTCAATGCTTCCACCTGCCCTGCAGAAAACATATGGGTGAATCCCCCATTTCTGTGTTCTGCACCTATCAAGTATCAATATGCCAATTTCTCCAGTCATGGTTACAAGAACACAGGAAAAGGTTCCTTGAAGCTTCAGTTGATTAATCAGAGATCTGACTTTTCATTTGCGCTTTTCACGGGTGGCTTAACTAATCCAAAGCTCGTTGCAGTGTCAAATAAAGTATCATTCATCAATCCAAATGCACCAGTATATCCCCGATTAGCACAAGGGAAAACATGGGATGAAATGACTGTAACTTGGACAAGTGGATATGAAATCAGTGACGCTGAACCTTTTGTTGAATGGGGCCCTAAAGGAGGGAACCTTGTGAAATCTCCTGCTGGGACACTGACTTTTGATCGCAACACCATGTGTGGTGCACCAGCAAGGACTGTTGGATGGCGTGACCCGGGATATATACACACTAGTTTTCTGAAGGAGTTGTGGCCCAACCGAGAGTACAAATACAAGCTGGGGCATAAATTATTTAATGGTACAATAATTTGGAGTCAAGAATACCAATTCAAAGCATCTCCTTATCCTGGTCAAAATTCCTTACAACGAGTAGTCATATTTGGTGATATGGGAAAGGCAGAAGCAGATGGTTCCAATGAATATAACAATTTCCAGCCTGGCTCACTCAACACTACTAAACAGATCATTCAAGACTTAAAAGATATAGATATTGTCTTCAACATTGGTGATTTAAGCTATGCTAATGGATACCTTTCACAGTGGGATCAGTTTACTGCACAAATTGAGCCAATTGCATCAACTGTACCTTATATGACAGCAAGTGGCAATCATGAACGTGACTGGCCAGATACTGGATCATTTTATGGGAACTTGGATTCTGGTGGTGAATGTGGTGTACTGGCTCAAACCATGTTTTATGTTCCAGCTGAGAACCGGGAAAAATTCTGGTACTCAGTTGACTATGGTATGTTCAGATTCTGCATAGCTAACACAGAACTCGATTGGAGAAAAGGATCAGAACAGTATAAATTCATTGAAAATTGCCTAGCATCAGTTGACAGACAAAAACAGCCATGGCTGATATTTCTTGCACATAGGGTACTTGGTTATTCTTCTGCAGGATTCTATGTGGCAGAAGGCTCTTTTGAAGAACCAATGGGAAGGGAGGACCTTCAATATCTTTGGCAAAAGTATAAGGTTGACATAGCAATGTATGGACATGTCCATAACTACGAAAGGACATGCCCAGTGTATCAAAATATCTGCACCAACAAAGAGGAGCACAATTACAAGGGCTCCTTGGATGGTACAATACATGTAGTGGTTGGAGGAGGAGGAGCATCCCTTGCTGAATTTGCCCCCATAAACACCACATGGAGTATATTTAAAGACCATGACTTTGGATTTGTCAAGCTTACAGCATTTGACCATTCAAACCTGTTGTTTGAGTACAAGAAAAGCAGTGATGGACAAGTTTATGACTCATTCAAAATATCCAGGCAGTACAGGGACATCTTGGCTTGCACTGTTGATAGTTGTCCCCCTACAACACTAGCATCTTGA
Predicted protein sequences of Glyma.18g132500
>Glyma.18g132500.1.p sequence-type=predicted peptide transcript=Glyma.18g132500.1 locus=Glyma.18g132500 ID=Glyma.18g132500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMTNGMGKSRVLFFSMLVLATFQKAVSEEHQPLSKVAIHKTTLALDERAFIKATPNVLGLKGQNTEWVTLQYSNPKPTVDDWIGVFSPANFNASTCPAENIWVNPPFLCSAPIKYQYANFSSHGYKNTGKGSLKLQLINQRSDFSFALFTGGLTNPKLVAVSNKVSFINPNAPVYPRLAQGKTWDEMTVTWTSGYEISDAEPFVEWGPKGGNLVKSPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYKYKLGHKLFNGTIIWSQEYQFKASPYPGQNSLQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLKDIDIVFNIGDLSYANGYLSQWDQFTAQIEPIASTVPYMTASGNHERDWPDTGSFYGNLDSGGECGVLAQTMFYVPAENREKFWYSVDYGMFRFCIANTELDWRKGSEQYKFIENCLASVDRQKQPWLIFLAHRVLGYSSAGFYVAEGSFEEPMGREDLQYLWQKYKVDIAMYGHVHNYERTCPVYQNICTNKEEHNYKGSLDGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLFEYKKSSDGQVYDSFKISRQYRDILACTVDSCPPTTLAS*






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