Report for Sequence Feature Glyma.18g062000
Feature Type: gene_model
Chromosome: Gm18
Start: 5646502
stop: 5649337
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.18g062000
Proteins Associated with Glyma.18g062000
Locus Gene Symbol Protein Name
FAD3c omega-3 fatty acid desaturase 3 gene 3
FAD3C microsomal omega-3 fatty acid desaturase
FAD3C fatty acid desaturase
Expression Patterns of Glyma.18g062000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.18g062000
Paralog Evidence Comments
Glyma.11g174100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.18g062000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma18g06950 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.18g062000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.18g062000.2 sequence-type=transcript locus=Glyma.18g062000 ID=Glyma.18g062000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTCACCACCATCTGCTCTACACTCATCTTATATATAGCTATCACCCCTCTCCAAAGCAGCATTGTAACAGAGAAAGAAACATTTGAGCAAAAATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCAAGCTTATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAAATATCAGAGCAGCAATTCCAAAACATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTATGTTCTGAGGGATGTGTTGGTAGTGACTGCATTGGTAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAACTTGTTCTCTCCTGGTGAGAGAAGAGATGTGCTAACTTCAACTCTGTGTTGGGGCATCATGCTTTCTGTGCTTCTCTATCTTTCCCTCACAATGGGTCCACTTTTTATGCTCAAGCTCTATGGGGTTCCCTATTTGATCTTCGTCATGTGGCTGGATTTCGTCACGTACTTGCATCATCATGGTTACAAGCAGAAACTGCCTTGGTACCGTGGCCAGGAATGGAGTTATCTAAGGGGTGGTCTTACAACAGTAGATCGCGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCGGTATTAATTCTCTATTTCACAAGAAATTATTGTATGTCTGCCTATGTGATCTAAGTCAATTTTCACATAACACATGATCAAACTTTCTTAATTCTTTCTTCTAAATTGAAAAAGT
>Glyma.18g062000.3 sequence-type=transcript locus=Glyma.18g062000 ID=Glyma.18g062000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTCACCACCATCTGCTCTACACTCATCTTATATATAGCTATCACCCCTCTCCAAAGCAGCATTGTAACAGAGAAAGAAACATTTGAGCAAAAATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCAAGCTTATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAAATATCAGAGCAGCAATTCCAAAACATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTATGTTCTGAGGGATGTGTTGGTAGTGACTGCATTGGTAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAACTTGTTCTCTCCTGGTGAGAGAAGAGATGTGCTAACTTCAACTCTGTGTTGGGGCATCATGCTTTCTGTGCTTCTCTATCTTTCCCTCACAATGGGTCCACTTTTTATGCTCAAGCTCTATGGGGTTCCCTATTTGGTAATCTCACTCTCACACTTTCTTTATACATCGCACACCAGTGTGGGTTATTTGCAACCTACACCGAAGTAATGCCCTATAATTAATGGGGTTAACACATGTCCAAGTCCAATATTTTGTTCACTTATTTGAACTTGAACATGTGTAGATCTTCGTCATGTGGCTGGATTTCGTCACGTACTTGCATCATCATGGTTACAAGCAGAAACTGCCTTGGTACCGTGGCCAGGTATCCCATTTAACACAATTTGTTTCATTAACATTTTAAGAGAATTTTTTTTTCAAAATAGTTTTCGAAATTAAGCAAATACCAAGCAAATTGTTAGATCTACGCTTGTACTTGTTTTAAAGTCAAATTCATGACCAAATTGTCCTCACAAGTCCAAACC
Coding sequences of Glyma.18g062000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.18g062000.1 sequence-type=CDS polypeptide=Glyma.18g062000.1.p locus=Glyma.18g062000 ID=Glyma.18g062000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCAAGCTTATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAAATATCAGAGCAGCAATTCCAAAACATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTATGTTCTGAGGGATGTGTTGGTAGTGACTGCATTGGTAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAACTTGTTCTCTCCTGGTGAGAGAAGAGATGTGCTAACTTCAACTCTGTGTTGGGGCATCATGCTTTCTGTGCTTCTCTATCTTTCCCTCACAATGGGTCCACTTTTTATGCTCAAGCTCTATGGGGTTCCCTATTTGATCTTCGTCATGTGGCTGGATTTCGTCACGTACTTGCATCATCATGGTTACAAGCAGAAACTGCCTTGGTACCGTGGCCAGGAATGGAGTTATCTAAGGGGTGGTCTTACAACAGTAGATCGCGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCTGGGCCATTGCCACTTCATCTAATAAAGTACTTGCTCCACAGCATAAGTCAGGATCACTTCGTTAGCGACTCTGGCGACATTGTGTACTACCAGACTGATTCCCAGCTCCACAAAGATTCTTGGACCCAGTCCAACTAA
>Glyma.18g062000.2 sequence-type=CDS polypeptide=Glyma.18g062000.2.p locus=Glyma.18g062000 ID=Glyma.18g062000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCAAGCTTATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAAATATCAGAGCAGCAATTCCAAAACATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTATGTTCTGAGGGATGTGTTGGTAGTGACTGCATTGGTAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAACTTGTTCTCTCCTGGTGAGAGAAGAGATGTGCTAACTTCAACTCTGTGTTGGGGCATCATGCTTTCTGTGCTTCTCTATCTTTCCCTCACAATGGGTCCACTTTTTATGCTCAAGCTCTATGGGGTTCCCTATTTGATCTTCGTCATGTGGCTGGATTTCGTCACGTACTTGCATCATCATGGTTACAAGCAGAAACTGCCTTGGTACCGTGGCCAGGAATGGAGTTATCTAAGGGGTGGTCTTACAACAGTAGATCGCGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCGGTATTAATTCTCTATTTCACAAGAAATTATTGTATGTCTGCCTATGTGATCTAA
>Glyma.18g062000.3 sequence-type=CDS polypeptide=Glyma.18g062000.3.p locus=Glyma.18g062000 ID=Glyma.18g062000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCAAGCTTATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAAATATCAGAGCAGCAATTCCAAAACATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTATGTTCTGAGGGATGTGTTGGTAGTGACTGCATTGGTAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAACTTGTTCTCTCCTGGTGAGAGAAGAGATGTGCTAACTTCAACTCTGTGTTGGGGCATCATGCTTTCTGTGCTTCTCTATCTTTCCCTCACAATGGGTCCACTTTTTATGCTCAAGCTCTATGGGGTTCCCTATTTGGTAATCTCACTCTCACACTTTCTTTATACATCGCACACCAGTGTGGGTTATTTGCAACCTACACCGAAGTAA
Predicted protein sequences of Glyma.18g062000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.18g062000.1.p sequence-type=predicted peptide transcript=Glyma.18g062000.1 locus=Glyma.18g062000 ID=Glyma.18g062000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQAQPLQHVGNGAGKEDQAYFDPSAPPPFKIANIRAAIPKHCWEKNTLRSLSYVLRDVLVVTALVAAAIGFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSPLLNSIVGHILHSSILVPYHGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDNMTRMMRFTLPFPIFAYPFYLWSRSPGKEGSHFNPYSNLFSPGERRDVLTSTLCWGIMLSVLLYLSLTMGPLFMLKLYGVPYLIFVMWLDFVTYLHHHGYKQKLPWYRGQEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKAVLGKYYREPQKSGPLPLHLIKYLLHSISQDHFVSDSGDIVYYQTDSQLHKDSWTQSN*
>Glyma.18g062000.2.p sequence-type=predicted peptide transcript=Glyma.18g062000.2 locus=Glyma.18g062000 ID=Glyma.18g062000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQAQPLQHVGNGAGKEDQAYFDPSAPPPFKIANIRAAIPKHCWEKNTLRSLSYVLRDVLVVTALVAAAIGFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSPLLNSIVGHILHSSILVPYHGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDNMTRMMRFTLPFPIFAYPFYLWSRSPGKEGSHFNPYSNLFSPGERRDVLTSTLCWGIMLSVLLYLSLTMGPLFMLKLYGVPYLIFVMWLDFVTYLHHHGYKQKLPWYRGQEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEAVLILYFTRNYCMSAYVI*
>Glyma.18g062000.3.p sequence-type=predicted peptide transcript=Glyma.18g062000.3 locus=Glyma.18g062000 ID=Glyma.18g062000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQAQPLQHVGNGAGKEDQAYFDPSAPPPFKIANIRAAIPKHCWEKNTLRSLSYVLRDVLVVTALVAAAIGFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSPLLNSIVGHILHSSILVPYHGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDNMTRMMRFTLPFPIFAYPFYLWSRSPGKEGSHFNPYSNLFSPGERRDVLTSTLCWGIMLSVLLYLSLTMGPLFMLKLYGVPYLVISLSHFLYTSHTSVGYLQPTPK*