|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G26310.1 | AT | Chalcone-flavanone isomerase family protein | JGI | N/A | IEA |
GO:0006631 | GO-bp | fatty acid metabolic process | EnsemblGenomes | N/A | IEA |
GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
GO:0005504 | GO-mf | fatty acid binding | EnsemblGenomes | N/A | IEA |
GO:0016872 | GO-mf | intramolecular lyase activity | EnsemblGenomes | N/A | IEA |
GO:0016872 | GO-mf | intramolecular lyase activity | JGI | N/A | IEA |
PF02431 | PFAM | Chalcone-flavanone isomerase | JGI | N/A | IEA |
PWY-2002 | SoyCyc9 | isoflavonoid biosynthesis I | Plant Metabolic Network | ISS | |
PWY-6325 | SoyCyc9 | echinatin biosynthesis | Plant Metabolic Network | ISS | |
PWY-6787 | SoyCyc9 | flavonoid biosynthesis (in equisetum) | Plant Metabolic Network | ISS | |
PWY1F-FLAVSYN | SoyCyc9 | flavonoid biosynthesis | Plant Metabolic Network | ISS | |
GN7V-65901 | SoyCyc9-rxn | chalcone isomerase | Plant Metabolic Network | ISS |
Locus | Gene Symbol | Protein Name |
---|---|---|
CHI3C2 | chalcone isomerase 3C2 |
Glyma.17g226600 not represented in the dataset |
Glyma.17g226600 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.14g098100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma17g34435 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g226600.1 sequence-type=CDS polypeptide=Glyma.17g226600.1.p locus=Glyma.17g226600 ID=Glyma.17g226600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACAACGATTTCGTTTGGCTTCCTTCGCTGTATTCCGATCCGGAACTATTCACCTATCTGGAGCCATTCGTGTTCCGCAGTTCTCCGAGCTCGCATTTCCTGCAATCGATGGCGAACAATTCCAGAAGCTTCGCGCTCGAGGAGGCGTTCGGACACGTGTCGCGGTTCGCCGGCGCGTTGCTGTTCTGGCTCTCGCGCGCGTCGAGTTCCAATTTGGCGCGTTCGCTGCGCGGTTCTTCTCCGCCGCTTCGGTTCGGTAGCGTGCAGGTTAAGGCTGTGTCGACGAATGTGCGCGTGTTCGGGTTTCCGTTCGGATTGAAGAGGAAATCGTCGTTTGCGAGTGTGAGGTTGGGGAAGATTTCTAGTTTGGCGATGAGGATGATTTGGAGAGAAGCGAAGAGGCTTCGCTCGTTCCCTGTTCTGTCGCTGGCGGCTGCGTTGGTTCCACCGTTTCAAAACTTGTCATCAAATGTACTATCTAGCCCGTTGCAGAATCCTGATGTGCAAATGTTTGGAGCCATGGACCAAGTGCCTAAGGAGGTTGAATGCCAAGGATGTGCATTCCTACCGTGTCTTGAGTTGAACCAGGCAAAACCTGCAGTGGAGCCTAAGACTGGTATTGAATTTCCTTTGGTTCTAGACAATATATTCACTGGAGAGAAGAATTATGACTTCAACTCTGAGGTCCTGGTTGGAACAGGATCCAGAACCATGACAATTGTTAAAATCAAGTCACTGAAGGTCTATGCTTTTGGAGTTTATGTTCATCCATATTCCCTCTGTGAGAAATTGGGGCCGAAATATGCATCAATTTCTGCTGATGAATTGAATAACCATCATGACTTCTATAAGGATCTTCTCAGGGAGGATATTAATATGACTGTTAGACTTGTTGTAAATTGCAGGGGCATGAAAATTAACAGCGTGAAGGATGCTTTTGAAAAATCACTTCGAGCTCGATTAGTAAAGACAAATCCATCCACGGACTTTAGCTGCCTAAAGACATTTGGTTCATACTTCACAGAGAATTTCTCAATTCCTTTGGGAACGATAATTGAGTTCAAACGAACAGTTGATGGACGTCTGATCACTAAAATTAGTGGCAATCAGATAGGAAGTGTCCACTGCAAAGATTTGTGCCGGGCTTTCTTTGACATGTACATTGGAGATGTCCCTGTGTGTGAACAAACTAAAAAGGAGATTGGCATGAATGCTGCGAATATTATTAGGAAGTGCTAA
>Glyma.17g226600.1.p sequence-type=predicted peptide transcript=Glyma.17g226600.1 locus=Glyma.17g226600 ID=Glyma.17g226600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNNDFVWLPSLYSDPELFTYLEPFVFRSSPSSHFLQSMANNSRSFALEEAFGHVSRFAGALLFWLSRASSSNLARSLRGSSPPLRFGSVQVKAVSTNVRVFGFPFGLKRKSSFASVRLGKISSLAMRMIWREAKRLRSFPVLSLAAALVPPFQNLSSNVLSSPLQNPDVQMFGAMDQVPKEVECQGCAFLPCLELNQAKPAVEPKTGIEFPLVLDNIFTGEKNYDFNSEVLVGTGSRTMTIVKIKSLKVYAFGVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDINMTVRLVVNCRGMKINSVKDAFEKSLRARLVKTNPSTDFSCLKTFGSYFTENFSIPLGTIIEFKRTVDGRLITKISGNQIGSVHCKDLCRAFFDMYIGDVPVCEQTKKEIGMNAANIIRKC*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||