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Report for Sequence Feature Glyma.17g090400

Feature Type:gene_model
Chromosome:Gm17
Start:7040797
stop:7042768
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g090400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23650.1AT calcium-dependent protein kinase 6 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0009738GO-bp abscisic acid-activated signaling pathway EnsemblGenomesN/AIEA
GO:0018105GO-bp peptidyl-serine phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0046777GO-bp protein autophosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004683GO-mf calmodulin-dependent protein kinase activity EnsemblGenomesN/AIEA
GO:0005516GO-mf calmodulin binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009931GO-mf calcium-dependent protein serine/threonine kinase activity EnsemblGenomesN/AIEA
PTHR24349Panther SERINE/THREONINE-PROTEIN KINASE JGI N/AIEA
PTHR24349:SF13Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Expression Patterns of Glyma.17g090400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g090400 not represented in the dataset
Glyma.17g090400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g090400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g09801 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g090400
>Glyma.17g090400.2 sequence-type=transcript locus=Glyma.17g090400 ID=Glyma.17g090400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAGAAGTAAGTGGGATTTTTAATGACGCGCAACATGTCTCTTCCTTTACTCTCTTGTGCTTAGGATTTCCAACGAACAGGGCCGTGACACTCTCTTGTGACCCACGACAACTTGGAGGATGTTCGGTGAGAGGTGAAAGATCATGCACCACCTCACCGGTCACCGCAACATCATGGAGCTCTGCGGCAGCGGTGAGCTTTTCGACCGGATCATCGCCAAGGGCCATTACCCCGAGCATGCCGCCGCCAACCTGTGCCGCCAGATTGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGACACATGCTTCGGTCTCTCCATTTTCTTCAAGCTCGGGAAGTTCCAAACTGAAATTGGCAAAGCCTGGACATCAAGAAGGAAGAATAATATATACCCAGTATTAAATTTTCTTCTTATTTTTTGTCTAAAGAATCAGCAGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCGATAAGGAGGGTGCTGATTCTGCAGTACAGAAATCTTTACTAACGTCTTTAAAGGTCAATTCCCAAATGCGTCAAGCAACTAAATAAGTAGGAGACGTTTACGTTGGAATATAGTTGAAATTTATGTTTTAGAAATGTTACACACGTGTGTAACGCGCTTGTTCGTTGAATTTTATTTTTGCGGCAACAACCGGCATTGTTTGGCTGTTCCTTGGAGTACGTGTTGTGTGTTTCGAAAATATCTAGTACTAAAGTCTTATGTCATTTATTTACGCTTTATTTTGTTTTTTTTAATAGAAATTgagaagagagaaaaaatgagatgacagaa

>Glyma.17g090400.3 sequence-type=transcript locus=Glyma.17g090400 ID=Glyma.17g090400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAATGACGCGCAACATGTCTCTTCCTTTACTCTCTTGTGCTTAGGATTTCCAACGAACAGGGCCGTGACACTCTCTTGTGACCCACGACAACTTGGAGGATGTTCGGTGAGAGGTGAAAGATCATGCACCACCTCACCGGTCACCGCAACATCATGGAGCTCTGCGGCAGCGGTGAGCTTTTCGACCGGATCATCGCCAAGGGCCATTACCCCGAGCATGCCGCCGCCAACCTGTGCCGCCAGATTGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGACACATGCTTCGGTCTCTCCATTTTCTTCAAGCTCGATTTGTTTCTGTGTAAAATCCATATGGTCTAGATCTTCTGAAATTTATTCTCCCACGACTTTTTGTAGAGTAGGGGAAGGATCTGGATGAATTTTTCTGGTCAATTGCTGGGAAGTTCCAAACTGAAATTGGCAAAGCCTGGACATCAAGAAGGAAGAATAATATATACCCAGTATTAAATTTTCTTCTTATTTTTTGTCTAAAGAATCAGCAGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCGATAAGGAGGGTGCTGATTCTGCAGTACAGAAATCTTTACTAACGTCTTTAAAGGTCAATTCCCAAATGCGTCAAGCAACTAAATAAGTAGGAGACGTTTACGTTGGAATATAGTTGAAATTTATGTTTTAGAAATGTTACACACGTGTGTAACGCGCTTGTTCGTTGAATTTTATTTTTGCGGCAACAACCGGCATTGTTTGGCTGTTC
Coding sequences of Glyma.17g090400
>Glyma.17g090400.1 sequence-type=CDS polypeptide=Glyma.17g090400.1.p locus=Glyma.17g090400 ID=Glyma.17g090400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACCACCTCACCGGTCACCGCAACATCATGGAGCTCTGCGGCAGCGGTGAGCTTTTCGACCGGATCATCGCCAAGGGCCATTACCCCGAGCATGCCGCCGCCAACCTGTGCCGCCAGATTGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGACACATGCTTCGGTCTCTCCATTTTCTTCAAGCTCGGGAAGTTCCAAACTGAAATTGGCAAAGCCTGGACATCAAGAAGGAAGAATAATATATACCCAGTATTAAATTTTCTTCTTATTTTTTGTCTAAAGAATCAGCAGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCGATAAGGAGGGTGCTGATTCTGCAGTACAGAAATCTTTACTAACGTCTTTAAAGGTGAATTGTTTCTTTAAATACTCAAATTTTCAAACATGCAGTGTAGTGAAGGGAATTTTACTAATTTTTAATTAA

>Glyma.17g090400.2 sequence-type=CDS polypeptide=Glyma.17g090400.2.p locus=Glyma.17g090400 ID=Glyma.17g090400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACCACCTCACCGGTCACCGCAACATCATGGAGCTCTGCGGCAGCGGTGAGCTTTTCGACCGGATCATCGCCAAGGGCCATTACCCCGAGCATGCCGCCGCCAACCTGTGCCGCCAGATTGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGACACATGCTTCGGTCTCTCCATTTTCTTCAAGCTCGGGAAGTTCCAAACTGAAATTGGCAAAGCCTGGACATCAAGAAGGAAGAATAATATATACCCAGTATTAAATTTTCTTCTTATTTTTTGTCTAAAGAATCAGCAGAAGATGAATGTTGTGAAGCAATTATATATTCTACAAGAGAGAATCGATAAGGAGGGTGCTGATTCTGCAGTACAGAAATCTTTACTAACGTCTTTAAAGGTCAATTCCCAAATGCGTCAAGCAACTAAATAA

>Glyma.17g090400.3 sequence-type=CDS polypeptide=Glyma.17g090400.3.p locus=Glyma.17g090400 ID=Glyma.17g090400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACCACCTCACCGGTCACCGCAACATCATGGAGCTCTGCGGCAGCGGTGAGCTTTTCGACCGGATCATCGCCAAGGGCCATTACCCCGAGCATGCCGCCGCCAACCTGTGCCGCCAGATTGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGACACATGCTTCGGTCTCTCCATTTTCTTCAAGCTCGATTTGTTTCTGTGTAAAATCCATATGGTCTAG
Predicted protein sequences of Glyma.17g090400
>Glyma.17g090400.1.p sequence-type=predicted peptide transcript=Glyma.17g090400.1 locus=Glyma.17g090400 ID=Glyma.17g090400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHHLTGHRNIMELCGSGELFDRIIAKGHYPEHAAANLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENSPLKDTCFGLSIFFKLGKFQTEIGKAWTSRRKNNIYPVLNFLLIFCLKNQQKMNVVKQLYILQERIDKEGADSAVQKSLLTSLKVNCFFKYSNFQTCSVVKGILLIFN*

>Glyma.17g090400.2.p sequence-type=predicted peptide transcript=Glyma.17g090400.2 locus=Glyma.17g090400 ID=Glyma.17g090400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHHLTGHRNIMELCGSGELFDRIIAKGHYPEHAAANLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENSPLKDTCFGLSIFFKLGKFQTEIGKAWTSRRKNNIYPVLNFLLIFCLKNQQKMNVVKQLYILQERIDKEGADSAVQKSLLTSLKVNSQMRQATK*

>Glyma.17g090400.3.p sequence-type=predicted peptide transcript=Glyma.17g090400.3 locus=Glyma.17g090400 ID=Glyma.17g090400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHHLTGHRNIMELCGSGELFDRIIAKGHYPEHAAANLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENSPLKDTCFGLSIFFKLDLFLCKIHMV*






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