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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G25220.1 | AT | anthranilate synthase beta subunit 1 | JGI | N/A | IEA |
| GO:0000162 | GO-bp | tryptophan biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006541 | GO-bp | glutamine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006541 | GO-bp | glutamine metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005950 | GO-cc | anthranilate synthase complex | EnsemblGenomes | N/A | IEA |
| GO:0004049 | GO-mf | anthranilate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG0026 | KOG | Anthranilate synthase, beta chain | JGI | N/A | IEA |
| PTHR11922 | Panther | GMP SYNTHASE-RELATED | JGI | N/A | IEA |
| PTHR11922:SF7 | Panther | ANTHRANILATE SYNTHASE COMPONENT 2 | JGI | N/A | IEA |
| PF00117 | PFAM | Glutamine amidotransferase class-I | JGI | N/A | IEA |
| TRPSYN-PWY | SoyCyc9 | L-tryptophan biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-45120 | SoyCyc9-rxn | anthranilate synthase | Plant Metabolic Network | ISS |
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Glyma.16g058800 not represented in the dataset |
Glyma.16g058800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g06333 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g058800.1 sequence-type=CDS polypeptide=Glyma.16g058800.1.p locus=Glyma.16g058800 ID=Glyma.16g058800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGCCACATTCTTCTCTCACTTGTCGCTTCTTCAATCCAACAACAACCCTTCTCTCTCTCACACACCCTCTCGCTTCCCTCATTCTCTCACCAACCGTGTCAAACCCTCCCTCGGTGTGGTATCTGTGGCCAAAAGGGTAAGTGGAGTGGTGCCAAAGGCCAATTTGAATGCCTTGGAGGCCAATTCGGGTTTCCCCATTTCGGCTAAGAAGTCCAACAACAACCCCATTGTTGTTATTGACAACTATGACAGTTTCACCTATAATCTTTGCCAGTATATGGGGGAGTTAGGGTTTCACTTTGAGGTCTACCGCAATGATGAGTTGACAGTGGAGGAGTTAAGAAGGAAAAATCCCAGAGGAGTGCTGATATCACCTGGGCCAGGAGAACCTCAAGATTCAGGCATATCTTTGCAAACGGTTTTGGAACTTGGACCAACTGTGCCATTGTTTGGTGTGTGCATGGGTTTGCAATGCATTGGAGAGGCTTTTGGAGGGAAGATTGTTCGTTCTCCTCATGGTGTTATGCATGGAAAAAGCTCTATGGTTTACTATGATGAGAAAGGAGAAGATGGATTACTTGCTGGACTATCAAATCCTTTCTTGGCTGGTAGATATCACAGCCTTGTAATTGAAAAAGAGAGCTTTCCTCATGATGAACTTGAGGCAACAGCATGGACAGAAGATGGTCTTATAATGGCTGCTCGTCATAAGAAATATAAGCATCTACAGGGTGTTCAGTTTCATCCAGAGAGCATCATAACCCCAGAAGGCAAGACAATTGTCCGTAATTTTGTCAAGCTTATCGAGAAAAGGGAGGCTGGTGGCTCTTGA
>Glyma.16g058800.1.p sequence-type=predicted peptide transcript=Glyma.16g058800.1 locus=Glyma.16g058800 ID=Glyma.16g058800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAATFFSHLSLLQSNNNPSLSHTPSRFPHSLTNRVKPSLGVVSVAKRVSGVVPKANLNALEANSGFPISAKKSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGEPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKSSMVYYDEKGEDGLLAGLSNPFLAGRYHSLVIEKESFPHDELEATAWTEDGLIMAARHKKYKHLQGVQFHPESIITPEGKTIVRNFVKLIEKREAGGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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