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Report for Sequence Feature Glyma.14g187200

Feature Type:gene_model
Chromosome:Gm14
Start:45175997
stop:45178040
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g187200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24680.1AT Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 JGI N/AIEA
KOG4696 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR13226Panther FAMILY NOT NAMED JGI N/AIEA
PTHR13226:SF14Panther PEPTIDASE C78, UBIQUITIN FOLD MODIFIER-SPECIFIC PEPTIDASE 1/ 2 JGI N/AIEA
PF07910PFAM Peptidase family C78 JGI N/AIEA

Expression Patterns of Glyma.14g187200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g187200 not represented in the dataset
Glyma.14g187200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g187200
ParalogEvidenceComments
Glyma.02g220600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g187200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.14g187200
>Glyma.14g187200.1 sequence-type=CDS polypeptide=Glyma.14g187200.1.p locus=Glyma.14g187200 ID=Glyma.14g187200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAACTTGGTAAGAGTTGGTGTGGTGGTAGAAATAATGGGGAGTGGAAAATGGATGAAAAGATCTCTTGCTTGCTTGGTTTGCAGAGTAGGGGAGAGTTTCACAAGGTTGAAAGGGGTTTGATGGCCTTGTTAAGCACCTGTTTGGAGTCAGACAGTGAAAACTCAAGAAGCATTTTGTCAGGTTATGTTGATCATTTCCAGAGAATTCCGTTTGAGGAAGTTGGATGGGGTTGTGTTTGGCGTAACATTCAAATACTTAGCTCACACTTACTGGCACAAAGGGCAGAACCAAGAGAAGCTATGTATGGTGGTTCAGGGTTTGTTCCTGATATCCCATCACTCCAGAGGTGGCTTGAGATTGCTTGGGAAAGGGGTTTTGATGCGCCTGGCGCTGATCAGAAATCTGAATCAATCTATCTATCTGTCCCTGGTTCAAGTGTAGGGGCAAAGGAGCTAGTAAGAATTAATGATGCAAGGAAGAGGAAAGCACCAAATACTTATGGACCAATGGAAATATATCTGTCTCGTGCTGTTGCTCAAGCTAGTTGTTGCCAAGATGCAAAGACATGTTCTTCTTTTATCCAGATTCGTGACACTGTGGATAAAGAAAGTAGTGATGATAGAGTGAGGCGAGTTCTTATTAGTCACAAAACGCCCTTGTACTTTCAACACGATGGACATTCAAGAACAATAGTTGGAATTCAAGTCAAACATCCACGGTCTGGAATTCCACAATACAGTCTCCTGGTTATGGATCCTGGTCATAGAACGGCTGCTCTAGAAAGATCAATTAGGGAGAAAGTTGGATGGCAGAAATTCATAAAAAGAGGAGTGCACACACTAAGGAAGCTACAGTACCAGTTGTGTTATGTTGATCCTGGAATTGCCAGTGAGGAGATGGAAAAACTCAAGACAATTGATGGTGTCTTCCTTGAATTTTAA
Predicted protein sequences of Glyma.14g187200
>Glyma.14g187200.1.p sequence-type=predicted peptide transcript=Glyma.14g187200.1 locus=Glyma.14g187200 ID=Glyma.14g187200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLGKSWCGGRNNGEWKMDEKISCLLGLQSRGEFHKVERGLMALLSTCLESDSENSRSILSGYVDHFQRIPFEEVGWGCVWRNIQILSSHLLAQRAEPREAMYGGSGFVPDIPSLQRWLEIAWERGFDAPGADQKSESIYLSVPGSSVGAKELVRINDARKRKAPNTYGPMEIYLSRAVAQASCCQDAKTCSSFIQIRDTVDKESSDDRVRRVLISHKTPLYFQHDGHSRTIVGIQVKHPRSGIPQYSLLVMDPGHRTAALERSIREKVGWQKFIKRGVHTLRKLQYQLCYVDPGIASEEMEKLKTIDGVFLEF*






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