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Report for Sequence Feature Glyma.13g165200

Feature Type:gene_model
Chromosome:Gm13
Start:27997373
stop:27999343
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g165200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23740.1AT ribosomal protein S11-beta JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0022627GO-cc cytosolic small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
KOG1728 KOG 40S ribosomal protein S11 JGI N/AIEA
PTHR10744Panther 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER JGI N/AIEA
PF00366PFAM Ribosomal protein S17 JGI N/AIEA

Proteins Associated with Glyma.13g165200
LocusGene SymbolProtein Name
RPS11 ribosomal protein S11

Expression Patterns of Glyma.13g165200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g165200
ParalogEvidenceComments
Glyma.17g105900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g165200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g23400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g165200
>Glyma.13g165200.2 sequence-type=transcript locus=Glyma.13g165200 ID=Glyma.13g165200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCTAATCTAATTCCTAGCCCACTTTAAAAAGCCCAGTAGCTGAAATCTTAACAAAAGGAGCGTCTTCCCTCAACTCCGAGCGAGAGAAGTTATTAGGGTTTTTGAGTGCGGCGGTCCAAACACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCAAATATTCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGGGATCACGTTATTATTGGTCAATGCAGGTGAGATTATATAAGAGAAACCTTTTTTGTGTACTAACCTGTAAATCTTGTATATTTAATGGTATAGATATCTGTTTGATTCTTGTTTGTAACACTTCTGCAGGCCTCTCTCTAAGACAGTGAGGTTCAATGTCTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGCAAAGAAGGCTTTTACTGGAATGTGAGCTTCGATTTCCAGTTTTTATTGAAGAAAAATGTTACCTTGTTATTTAGTAGATCTGATTTCTTTTCTGGAAGGTGACATATTAAAACCTTATCAATTTTGGATTTTCTTTGAGGTTTCGTTCTGGCTTTATGTTTAGGATTTTGTTATACATTATGTTTTTCGAATACTATTTGCCTTTTAATTTTTGAAACTATGCAGACTCTTCATTTGCTTTACCAGTAATATATTTAGTTTACTCGGGTTTCTAAAGTTTGGTTGAATATGTTTTAAACTGAGATTGAGATTTGGGCCC

>Glyma.13g165200.3 sequence-type=transcript locus=Glyma.13g165200 ID=Glyma.13g165200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCTAATCTAATTCCTAGCCCACTTTAAAAAGCCCAGTAGCTGAAATCTTAACAAAAGGAGCGTCTTCCCTCAACTCCGAGCGAGAGAAGTTATTAGGGTTTTTGAGTGCGGCGGTCCAAACACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTATTCTCCTGCCATCCTTTTTAGCCTTTTTTTTTGTTTGGTATGTTTGTAGAAACATAATTACAATTCCATTTTTATTTTTTTG
Coding sequences of Glyma.13g165200
>Glyma.13g165200.1 sequence-type=CDS polypeptide=Glyma.13g165200.1.p locus=Glyma.13g165200 ID=Glyma.13g165200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCAAATATTCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGGGATCACGTTATTATTGGTCAATGCAGGCCTCTCTCTAAGACAGTGAGGTTCAATGTCTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGCAAAGAAGGCTTTTACTGGAATGTGA

>Glyma.13g165200.2 sequence-type=CDS polypeptide=Glyma.13g165200.2.p locus=Glyma.13g165200 ID=Glyma.13g165200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCAAATATTCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGGGATCACGTTATTATTGGTCAATGCAGGTGA

>Glyma.13g165200.3 sequence-type=CDS polypeptide=Glyma.13g165200.3.p locus=Glyma.13g165200 ID=Glyma.13g165200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAAGAAGACTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTATTCTCCTGCCATCCTTTTTAGCCTTTTTTTTTGTTTGGTATGTTTGTAG
Predicted protein sequences of Glyma.13g165200
>Glyma.13g165200.1.p sequence-type=predicted peptide transcript=Glyma.13g165200.1 locus=Glyma.13g165200 ID=Glyma.13g165200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM*

>Glyma.13g165200.2.p sequence-type=predicted peptide transcript=Glyma.13g165200.2 locus=Glyma.13g165200 ID=Glyma.13g165200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCR*

>Glyma.13g165200.3.p sequence-type=predicted peptide transcript=Glyma.13g165200.3 locus=Glyma.13g165200 ID=Glyma.13g165200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYSPAILFSLFFCLVCL*






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