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Report for Sequence Feature Glyma.12G179700

Feature Type:gene_model
Chromosome:Gm12
Start:34002160
stop:34006655
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12G179700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22860.1AT Serine carboxypeptidase S28 family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity JGI N/AIEA
GO:0008239GO-mf dipeptidyl-peptidase activity EnsemblGenomesN/AIEA
KOG2183 KOG Prolylcarboxypeptidase (angiotensinase C) JGI N/AIEA
PTHR11010Panther PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED JGI N/AIEA
PTHR11010:SF13Panther JGI N/AIEA
PF05577PFAM Serine carboxypeptidase S28 JGI N/AIEA

Expression Patterns of Glyma.12G179700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12G179700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g179700 Wm82.a4.v1ISS As supplied by JGI
Glyma12g30420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12G179700
>Glyma.12g179700.1 sequence-type=CDS polypeptide=Glyma.12g179700.1.p locus=Glyma.12g179700 ID=Glyma.12g179700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATCCGTTTTGCCCTCATTTCAATGGCTTTCTTTGTTCTTTCTAATTATCTCAGTTAATGTTTGTGCTTTCAAAATTCCAAGGTTAGGAACTTGGCAGAGATCAACCAAGGAACGCGACCCCGAAATCAGTTCTTCCTTGCACTTGTCTGATGATGACCTCAAAACATTTTATTATACCCAAAGACTCGATCACTTCAACTACAGACCTGACAGCTACCACACTTTCCAACAAAGATATATGGTCAATTTCAAGTACTGGGGTGGAGCTAAATCAAGTGCACCCATTTTTGCCTTCTTTGGTGCAGAAGGACCAGTGGATGAGGATGCAAAATATATCGGGTTTCTCAGAGATAACGCTCCTCAGTTCAATGCTCTTATTGTTTTTATCGAGCATAGATACTATGGGAAATCAATACCATTTGGGTCAAGCGAAGAAGCAATGAGAAATGCAAGTACTCGTGGCTACTTCAACTCAGCCCAAGCAATAGCAGACTATGCTGCTGTGCTTCTACACATCAAGAAAACTTTGTCTGCTCAGAATTCCCCCATAATCGTTATTGGAGGCTCTTATGGTGGAATGCTTGCATCATGGTTTCGCCTAAAGTATCCCCACATTGCTCTTGGTGCTCTTGCTTCATCAGCACCAATTCTTTATTTCAACGGCATTGCCCCACAAGCCGGATACTACTATATTGTCACCAAGGATTTCAAAGAAACTAGTGAGAGCTGTTACCAAACTATACGTAAATCATGGTCTGAAATTGACAGAGTTGCTAAGAAGCCAAATGGTCTTTCAATCCTCAGCAAGAGATTTAAAACTTGCGACAAATTGAACAAAAGTTTTGATCTCAAGGACTACTTGGACTCGTTATATACGGACGCAGCTCAATACAATTACCCTTCTGAGCACCCAGTTAAGATCGTATGTGGAGCAATTGACGCAGCTGCTAAGAAAACCGATATTCTTGGCCAAATATTTGAAGGTGTTGTTGCTTATAAGCAACATCGTTCATGTTATGACATGAATGAATATAACCATCCAACTGAATCTTTCCTGGGTTGGAGATGGCAGACATGCAGCGAGATAATTATGCCAATAGGTCATGAAAAGAACGACTCAATGTTTCCACCAGCACCTTTCAATATGAAGACATTTGTTCAAGAGTGTAGGAGCTTATATGGTGTCCTTCCCCAGCCTCATTGGGTGACCACATATTATGGGGGTCCTGATTTGAAACTGATCCTCCATAGGTTTGCCAGCAACATCATATTCTCCAATGGATTGCGAGATCCGTACAGTTCTGGCGGGGTGTTGGAGAGTATTTCGAACACTGTCGTTGCCGTTACTACTGTAAATGGGTGTCACTGCCTGGACATACAGTCAAGAAAGGCAAATGATCCTCAATGGTTGGTGACGCAGAGAAATACCGAGGTCAAGATAATCAAAGGCTGGATTGCCGAGTACAAAGCTGATCTAATAGCACTTACTAAACAAATCAAAGCACCAGCAGAACCCAAAAGCTAA
Predicted protein sequences of Glyma.12G179700
>Glyma.12g179700.1.p sequence-type=predicted peptide transcript=Glyma.12g179700.1 locus=Glyma.12g179700 ID=Glyma.12g179700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSVLPSFQWLSLFFLIISVNVCAFKIPRLGTWQRSTKERDPEISSSLHLSDDDLKTFYYTQRLDHFNYRPDSYHTFQQRYMVNFKYWGGAKSSAPIFAFFGAEGPVDEDAKYIGFLRDNAPQFNALIVFIEHRYYGKSIPFGSSEEAMRNASTRGYFNSAQAIADYAAVLLHIKKTLSAQNSPIIVIGGSYGGMLASWFRLKYPHIALGALASSAPILYFNGIAPQAGYYYIVTKDFKETSESCYQTIRKSWSEIDRVAKKPNGLSILSKRFKTCDKLNKSFDLKDYLDSLYTDAAQYNYPSEHPVKIVCGAIDAAAKKTDILGQIFEGVVAYKQHRSCYDMNEYNHPTESFLGWRWQTCSEIIMPIGHEKNDSMFPPAPFNMKTFVQECRSLYGVLPQPHWVTTYYGGPDLKLILHRFASNIIFSNGLRDPYSSGGVLESISNTVVAVTTVNGCHCLDIQSRKANDPQWLVTQRNTEVKIIKGWIAEYKADLIALTKQIKAPAEPKS*






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