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Report for Sequence Feature Glyma.11g245600

Feature Type:gene_model
Chromosome:Gm11
Start:33902206
stop:33904929
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g245600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67730.1AT beta-ketoacyl reductase 1 JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1014 KOG 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 JGI N/AIEA
PTHR24316Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24316:SF38Panther JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
PWY-5080SoyCyc9 very long chain fatty acid biosynthesis I Plant Metabolic Network ISS
PWY-7036SoyCyc9 very long chain fatty acid biosynthesis II Plant Metabolic Network ISS
GN7V-56530SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.11g245600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g245600
ParalogEvidenceComments
Glyma.18g011600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g245600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g37560 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g245600
>Glyma.11g245600.1 sequence-type=CDS polypeptide=Glyma.11g245600.1.p locus=Glyma.11g245600 ID=Glyma.11g245600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATGCTGCATAATCTCCAGGCTCAAGACCCAACCCATATGGTTCGCGCTTCTCTTTATTGTGGGATTGTTAACGATTCTCAAATTGGCATTCGTTGTTCTCAGATGGGTCTACGTCAATTTCCTCAGACCACCGAAGAATCTCAAAAAGTACGGATCTTGGGCCGTGGTTACTGGACCCACCGACGGCATTGGAAAGAGCTTCGCCTTCGAGCTCGCTCGCAAGGGCTTGAACCTCGTCCTTGTCGGAAGAAACCCCGACAAGCTCAAAGACGTGTCGGATTCCATCGCGGCGAGGTTCGGAAAAACCGAGGTTAAGACCGTCGTGGTTGATTTCTTCGGGGATCTGGACGAGGGCGTCAAGAAGATCAGCGAAGCGATTCAAGGGTTGGAAGTTGGAGTGCTCGTTAACAATGTGGGTGTTTCGTACCCTTACGCGAGATTCTTCCATGAAGTGGACGAGGGGCTTCTTAACAACCTTATTAAGCTTAACGTTGTTGGAACTACTAAGGTAACGCAAGCTGTTCTTCCCGGGATGCTGAAGAGAAAGAAGGGTGCGATTGTTAACATGGGTTCTGGAGCTGCTATTGTTATTCCTTCGGATCCTCTTTATGCTGTTTATGCTGCCACCAAAGCGTACATCGATCAGTTTTCGAGATGTCTCTATGTTGAATACAAGAGGAGTGGAATTGACGTTCAGTGTCAGGTTCCATTATATGTGGCAACCAAGATGGCATCAATCAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCAGGTGTGAAATGGATAGGCTATGAGCCTCGCTGCACACCATACTGGCCGCATACTCTTCTTTGGGCCGTGGCGTGCTCATTGCCTGAGTTTGTCGTCGATGCTTGGCGCCTGTGGTTTTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAGGATTCCATGAAGAAGGAATAA
Predicted protein sequences of Glyma.11g245600
>Glyma.11g245600.1.p sequence-type=predicted peptide transcript=Glyma.11g245600.1 locus=Glyma.11g245600 ID=Glyma.11g245600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MECCIISRLKTQPIWFALLFIVGLLTILKLAFVVLRWVYVNFLRPPKNLKKYGSWAVVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAARFGKTEVKTVVVDFFGDLDEGVKKISEAIQGLEVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKLNVVGTTKVTQAVLPGMLKRKKGAIVNMGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKRSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVACSLPEFVVDAWRLWFCLGIRKRGQRKDSMKKE*






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