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Report for Sequence Feature Glyma.10g247900

Feature Type:gene_model
Chromosome:Gm10
Start:47623981
stop:47628091
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g247900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14880.1AT O-acetylserine (thiol) lyase (OAS-TL) isoform A1 JGI N/AIEA
GO:0006535GO-bp cysteine biosynthetic process from serine EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004124GO-mf cysteine synthase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
KOG1252 KOG Cystathionine beta-synthase and related enzymes JGI N/AIEA
PTHR10314Panther SER/THR DEHYDRATASE, TRP SYNTHASE JGI N/AIEA
PTHR10314:SF8Panther CYSTEINE SYNTHASE JGI N/AIEA
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI N/AIEA
CYSTSYN-PWYSoyCyc9 L-cysteine biosynthesis I Plant Metabolic Network ISS
GN7V-57535SoyCyc9-rxn cysteine synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g247900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g247900
ParalogEvidenceComments
Glyma.20g148100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g247900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g39320 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g247900
>Glyma.10g247900.1 sequence-type=CDS polypeptide=Glyma.10g247900.1.p locus=Glyma.10g247900 ID=Glyma.10g247900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGTTGAAAAGTCTGGAATTGCCAAAGATGGTACAGAGTTGATCGGCAAAACCCCATTAGTATATCTGAATAAAATCGCAGATGGTTCTGCTGCGCGGGTTGCTGCCAAACTGGAGTTGATGGAGCCATGCTCTAGTGTAAAAGACAGGATTGCCTATAGTATGATTGCTGATGCAGAGGAGAAGGGACTTATCACACCTGGACAGAGTATCCTTATTGAGCCAACAAGTGGTAATAATGGGATTGGATTAGCCATCCTGGCAGCAGCCAAAGGTTACAAGCTTATAATCACAATGCCTGCTTCAATGAGTCTTGAAAGAAGAACCATTCTTCTGTCTTTTGGAGCTGAGTTGATAAGACTCCCAACAGCTGCATACTTCAGCAATTTGAAAAACCCTGCCAATCCTAAGGTACATTATGAAACCACTGGTCCAGAGATATGGGAAGGCACAGGAGGGAAAGTTGATGCACTTGTTAGTGGTATAGGTACTGGTGGTACCATAACGGGTGTAGGGAAATTTCTTAAAGAGAAGAATCCTAATATAAAGCTCTATAGTGTGGAACCAGTTGAAAGTCCAGTACTCTCTGGAGGAAAACCTGGTCCACACAAGATTCAAGGGATTGGTGCTGGTTTTGTCCCTGGAGTATTGGAAGTTAGCCTTGTAGATGAAGTAGTTCAAATATCAAGTGATGAAGCTATAGAAACTGCAAAACTTCTTGCACTTAAAGAAGGCCTATTTGTTGGAATATCATCTGGAGCTGCAGCTTCAGCTGCCATTAAGATAGCGAAAAGATCAGAAAATGCTGGAAAGCTTATTGTAGTTATTTTCCCAAGCTTTGGTGAGTGGTATCTGTCCTCTGTGCTGTTTGAGTCAATCAGACAGGAAGCTGAAAGTCTTACTTTTGAATCCTGA
Predicted protein sequences of Glyma.10g247900
>Glyma.10g247900.1.p sequence-type=predicted peptide transcript=Glyma.10g247900.1 locus=Glyma.10g247900 ID=Glyma.10g247900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVEKSGIAKDGTELIGKTPLVYLNKIADGSAARVAAKLELMEPCSSVKDRIAYSMIADAEEKGLITPGQSILIEPTSGNNGIGLAILAAAKGYKLIITMPASMSLERRTILLSFGAELIRLPTAAYFSNLKNPANPKVHYETTGPEIWEGTGGKVDALVSGIGTGGTITGVGKFLKEKNPNIKLYSVEPVESPVLSGGKPGPHKIQGIGAGFVPGVLEVSLVDEVVQISSDEAIETAKLLALKEGLFVGISSGAAASAAIKIAKRSENAGKLIVVIFPSFGEWYLSSVLFESIRQEAESLTFES*






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