SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g197000

Feature Type:gene_model
Chromosome:Gm10
Start:42826875
stop:42843526
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g197000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04360.1AT limit dextrinase JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0005983GO-bp starch catabolic process EnsemblGenomesN/AIEA
GO:0019252GO-bp starch biosynthetic process EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0010303GO-mf limit dextrinase activity EnsemblGenomesN/AIEA
GO:0043169GO-mf cation binding JGI N/AIEA
GO:0051060GO-mf pullulanase activity EnsemblGenomesN/AIEA
KOG0470 KOG 1,4-alpha-glucan branching enzyme/starch branching enzyme II JGI N/AIEA
PTHR10357Panther ALPHA-AMYLASE JGI N/AIEA
PTHR10357:SF22Panther JGI N/AIEA
PF00128PFAM Alpha amylase, catalytic domain JGI N/AIEA
PF02922PFAM Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JGI N/AIEA
PF11852PFAM Domain of unknown function (DUF3372) JGI N/AIEA
GN7V-47210SoyCyc9-rxn Limit dextrinase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g197000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g197000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g34080 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g197000
>Glyma.10g197000.1 sequence-type=CDS polypeptide=Glyma.10g197000.1.p locus=Glyma.10g197000 ID=Glyma.10g197000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATCTGTTAGCATCATCCTCTTCTCTTTCTCCTTCTCTCCCTTCTTCATTCCCTCGCCCTTCTCTCCATCTCCACCTTCACTTTCCTTCCCAAACTACCCAGCTTCGCCTCCATACCCCACCACCCCTTTCTTGCTCCCTTAATTCTTCTTCTTCTTCTTCTTACGTGGAACAATCTGCTTCATCTTCTCAGATGCAGAATGGCTTGCTGTACTCCAGAGCTTATTGGGTTGCTGAATCTCTCATAGCTTGGGACGTGGATGTTGGAAACGGGTTTTCTTGCTACCTGCTTGCCAGCAAAAATGCTTCTTTGACCATTGCAAATTGCCAAATTCAAGGCGAGGATTTGAAAATTAAGCTTCAGGAGGATAGGGTTGGCCTTCCTGCAAATGTGGTGGAGAAATTTCCCCATATTCGAGGTCACAAAGTTTTCAGCCTGCCACCTACTTTGGATGTTAAGCCTCTTCTTAAATTCCGGTTAGCAGTTGTTATTTGTGATTCTGATGGGGAATGCATGAACTGTACTGGTTTGCAATTACCTGGTGTTTTAGATGACCTTTTCTCATATAGTGGTCCCCTTGGTGCACTTTTCTCAGAGGAAGCTGTGTCACTTTACCTGTGGGCACCTACTGCTCAAGCAGTGCATGCTTACATCTATAAGGACCCATCAGGAGATGATCCCATAGAAATTGTTTGCCTTGAGGAGGAAAATGGTGTTTGGAGAACTAAAGGACCAAAAAGTTGGGAAGGTTGTTACTATGTTTATGAAGTATGTGTTTACCACCCTAGCACTATGCGGATTGAAAAATGCTATACAAGTGATCCATATGCAAGAGGACTTTCATCAGATGGCAGGCGGAGTTTTCTGCTTAATCTTGACTCTGTTAAGTTAAAACCTGATGGATGGGATAATCTGGCAAATAAAAAACCTACTATACATTCTTTCTCTGATATAAGCATATATGAAATGCATATAAGGGATTTCAGTGCCAGTGACCTCTCTGTGCAACCTGAATTTCGTGGTGGTTATCTGGCCTTTACATTGCAGGATTCTGCGGGTGTACTTCATCTGAAGAAATTATCAAGTGCTGGTATCACTCATGTCCATCTATTGCCAACATTTCAGTTTGCTGGGGTTGATGATCAAAAGGAGGACTGGAGATTTGTAGATACCTCAATACTGGAAAGTTTGCCACCTGATTCAGATCAGCAACAAGCTCTCATCACAGCCATCCAAAACTTTGATGGTTACAACTGGGGGTACAACCCTGTTCTTTGGGGCGTTCCTAAAGGCAGCTATGCAAGTAATCCAAACGGTCCATACCGTACAATTGAGTTCCGAAAGATGGTTATGGCTCTTAACCATATCGGCCTCCGTGTTGTCTTGGATGTTGTCTACAATCATTTGCAAGGAAGTGGGCCTTTTGATGAACATTCTGTCCTTGATAAGATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTTTGATCCTTGATGATCTTGTACACTGGGCTGTCAATTACAAGATTGATGGGTTCAGATTTGATCTTATGGGCCATATAATGAAGAGCACAATGGTGAAAGCAAAAACTGCTCTCCAATGTTTAACAAAAGAAAAGGATGGACTTGATGGTTCAAGCATCTACATATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGCTTTAATGACCGAATTCGAGATGCCATACTTGGTGGATCTCCGTTTGGCCACCCTCTACAACAGGGTTTTGTGACTGGGCTACTCTTGCAGCCTAATGGCCATGACCATGGAACAGAAGCTAATGCGAAATCCATGCTTGCTGCATCAATGGATCACATCCAGATTGGAATGGCTGCAAACTTGAAGGATTTTGTGCTAACCAATTCTGAAGGGGAAGAGGTAAAAGGGTCAGAAATATTAACATATGGTGGGACACCTGTTGCATATGCCTCATGCCCCATAGAGACAATCAATTATGTTTCTGCTCATGACAATGAAACCCTATTTGACATTGTGAGCTTAAAGACTCCAATGGATATCAGTGTATCTGAGAGATGCAGGATAAACCATTTGGCAACCAGTATTATAGCATTATCACAGGGTATACCATTTTTTCATTCTGGAGATGAGATACTCCGCTCAAAATCACTGGATCGAGATTCTTACAATTCTGGTGATTGGTTCAACAGACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTAATCAAACCAAGACTGGCAAACCCATCCTTCAGGCCTCAGAAGACTGACATCCTTGCTACGGTGGACAATTTCTTGAACCTGCTGCGTATAAGATACTCTTCACCACTTTTCCGCTTGAAGACAGCTAACACTATCCAGGAACGAGTACGCTTTCACAACACTGGACCATCATGGGTTTGTGGAGTCATAGTGATGAGCATTGAAGATGGTCACAATGGCTTTCCTGGGTTGTCTCAGTTGGATCCCATATATTCGTTCATTGTGGTTGTTTTCAATGCGAGTCCAAAAGAAGTATCATTTGTTAGCCCTGCCCTGCAATTGAGAAATCTCCAGTTGCATCCCATACAGGTATCATCATCTGACGACCTTGTTAAGAGCTCAAGATATGAGGCATCTTCTGGCTGTTTTGTTGTGCCTCGAAGGACAACAGCTGTGTTTGTGGAGCCAAGGAAAACGTGA
Predicted protein sequences of Glyma.10g197000
>Glyma.10g197000.1.p sequence-type=predicted peptide transcript=Glyma.10g197000.1 locus=Glyma.10g197000 ID=Glyma.10g197000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHLLASSSSLSPSLPSSFPRPSLHLHLHFPSQTTQLRLHTPPPLSCSLNSSSSSSYVEQSASSSQMQNGLLYSRAYWVAESLIAWDVDVGNGFSCYLLASKNASLTIANCQIQGEDLKIKLQEDRVGLPANVVEKFPHIRGHKVFSLPPTLDVKPLLKFRLAVVICDSDGECMNCTGLQLPGVLDDLFSYSGPLGALFSEEAVSLYLWAPTAQAVHAYIYKDPSGDDPIEIVCLEEENGVWRTKGPKSWEGCYYVYEVCVYHPSTMRIEKCYTSDPYARGLSSDGRRSFLLNLDSVKLKPDGWDNLANKKPTIHSFSDISIYEMHIRDFSASDLSVQPEFRGGYLAFTLQDSAGVLHLKKLSSAGITHVHLLPTFQFAGVDDQKEDWRFVDTSILESLPPDSDQQQALITAIQNFDGYNWGYNPVLWGVPKGSYASNPNGPYRTIEFRKMVMALNHIGLRVVLDVVYNHLQGSGPFDEHSVLDKIVPGYYLRRNSDGLIEHSTCINNTASEHFMVERLILDDLVHWAVNYKIDGFRFDLMGHIMKSTMVKAKTALQCLTKEKDGLDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLPGTQIGSFNDRIRDAILGGSPFGHPLQQGFVTGLLLQPNGHDHGTEANAKSMLAASMDHIQIGMAANLKDFVLTNSEGEEVKGSEILTYGGTPVAYASCPIETINYVSAHDNETLFDIVSLKTPMDISVSERCRINHLATSIIALSQGIPFFHSGDEILRSKSLDRDSYNSGDWFNRLDFTYNSNNWGVGLPPQEKNEKNWPLIKPRLANPSFRPQKTDILATVDNFLNLLRIRYSSPLFRLKTANTIQERVRFHNTGPSWVCGVIVMSIEDGHNGFPGLSQLDPIYSFIVVVFNASPKEVSFVSPALQLRNLQLHPIQVSSSDDLVKSSRYEASSGCFVVPRRTTAVFVEPRKT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo