SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g196700

Feature Type:gene_model
Chromosome:Gm10
Start:42807536
stop:42810483
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g196700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53350.1AT Disease resistance protein (CC-NBS-LRR class) family JGI N/AIEA
GO:0006952GO-bp defense response EnsemblGenomesN/AIEA
GO:0043531GO-mf ADP binding EnsemblGenomesN/AIEA
GO:0043531GO-mf ADP binding JGI N/AIEA
KOG4658 KOG Apoptotic ATPase JGI N/AIEA
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI N/AIEA
PTHR23155:SF121Panther JGI N/AIEA
PF00931PFAM NB-ARC domain JGI N/AIEA

Expression Patterns of Glyma.10g196700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g196700 not represented in the dataset
Glyma.10g196700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g196700
ParalogEvidenceComments
Glyma.20g193300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Transcripts of Glyma.10g196700
>Glyma.10g196700.2 sequence-type=transcript locus=Glyma.10g196700 ID=Glyma.10g196700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCAATTACTCTCGGACGAGAAAAGTCGCTGCATTACTTCAATTGTTGGAATTGAAGGTACAGTGCCTCCAAGTTGTACGGTTGAACAACTTCTACAAGAAGTAGCCGAAGAGGCTGCCAAACAAATTATGGGTGGCCAGCAAGACAGATGGACAACACAAGTTGTATTCACAACTTTGGCGAATACAAAGTATCTCATTGTTGTTGATGGCATCAAAACTTCCCATGTCTTGGATACCTTGAGAGAGACCATACCTGACAAGTCGACAAGAAGCAGATTTCTTCTTACCACTTGCAATGCAAATGTATTGCAACAAGCGGGTACAAGATCCTTTGTTCTTCCTATCCAGTTACTAGACGATGAAAATAGTTGGATTCTGTTTACAAGAATTTTGAGGGACGTTCCCTTAGAACAAACAGATGCTGAAAAAGAAATTGTAAATTGTGGGGGCCTGCCATCGGAAATATTAAAAATGAGCGAGTTGCTTTTACATGAAGATGCCAGAGAGCAGTCCATTATAGGTCAAAACCCTTGGTCTGAAACACTTAACACAGTCTGCATGAACTTACCTTCATACCTGAGGAGATGTTTATTTTATTTCAAGCTATTCCCTGCTGATTTTGGGATTCCAGTAAGAAGATTGATTGTTTTGTGGGTTGCAGAGGGTCTAGTGCATCAAGGGGAAGACCAAGGGCCACCAGAGCTAATTGCAGAAAAGTACTTGGCAGAGTTGATAGATCTGAACATGGTTCAAATTGCCAAGAGAAAGCCCAATGGCAAGGTGAAAACATGTCGTCTCCCTAATCCTTTTCGTGAATTCTTGCTGAATGCAGCAGTACCAACAAATTCCAGAATACGTCAAGTGGCAGATCGTTTTGACGAAAATGATACCTGGCACAGACATATTCATGGCAACACTACTACAAGTGATTCAGCTTCCCTGTTAACCAACTACAAGGATGTTCTCTCCTTCCTGTCCTTTGATGCTCGAGAAGGAAGTAAACCTGGCCAAGATATAAGTAACTTTCTAAACCTGTGCATCTCGAGCAATTGTCTTCTACTACTGCGGGTGCTTGATCTAGAAGGTGTTTACAAGGCCAAATTGCCTAAAAACATTGGAAGACTTACTCGATTGAGGTATCTTGGCCTAAGATGGACTTATGTAGAGTCACTTCCATCATCTATAAGCAGCTTGCTGAAACTCCAGACTCTTGATCTGAAATACACTTACATACATACTCTAACCAGCTCCATCTGGAAGATGGAACTGAGACACTTGTTCTTGAGTGAAACTTATCGCACCAAATTTCCACCCAAGCCAAAAGGTATACGCATAGGTAGTTCTCTATCTGACCTCCAAACATTGTGGGGACTATTTGTAGACGAAGAGACTCCGGTCAAGGGTGGTCTGGACAAATTGGTCAATATCAGAAAATTGGGAATAACATGCCAATCAATGTCAAAAAAGCAAGAGGCAATGGAATCGCAACTTGATGTAGTAGCTGACTGGATTGTGAAATTAGACTACCTTCAATCACTGAGGCTAAAATCAAGAGATGAAGAAGGTCGACCTTGGAATATACACTTGAAGTCTTTGAAAAATCACATTAATCTCACAGACGTGTATTTGCTGGGATGCTTGAGCAGTCCATCCATTTTGAACCAATTGCCCTCAAGCCTTGTTGAACTTACTCTATCACATTCAAAACTAGAGGATGATCCCATGCAAACTTTGAAAGATCTTCCAAATCTTCACTCATTGTCTTTACTTGCAGAATCCTACCTGGGAAAAGATTTGGTTTGCAGTTCTCAAAGCTTTCCTCAGCTTCATGTTTTAAAATTTTGGAAGCTGGAGCAATTAGAGGAATGGAATATAGAGCCAGAAGCACTTCCCTCTCTCAGACAGCTGGAAATCCGATCATGTCCGGGCATGAAAATGCTTCCTGATGGACTAAAGCATGTTAACACTCTCCTTGAGTTGAAATTGACAAACATGCCAACGGAAATCAATACTGACAAGCATTCCATTCCGCCCAAATGTGAAGTCCACAGAGATGATTCTCAGTAGAGCTATCATCATTGCATGTGAGCAGCAGTTTGTCTACAACGGCTTGTCATGAGGGGAAGCCTTATATGCACTAGTAGTGATTGAAAGGTAAGTTTGGTTCTAGTTGAAGGCTATGAAATTGAAAAAATGTTTCTTAAAATAATTTGTATTGCGACGTGTGTTTTTCTTTATTGTGTTGTGTATTCCAAATCCAGATTGAGGGAGTTGTTGTTTGTGTGTGACAAGCAAGAATTTGTATTGTGACGTGTTATTTTCGTTTATTATATTGTGTAATCCAAATCTAGTTATGAGTAGCGTTATCAAAACCGGTTCAGCAATTCGATCGGTTGGTCCGGTGACACGTTATCAAACCGGTCCTAAACCTGGTTAAACTGGTGTCTGATTCGGACCGGTCCGTTCATAAATTTTATTCTCCAAGACCAAGGCTGACTGTACTTTAACTTTTCTTCAGTGTTGTATGGCACACACTCACAATAAATCACAGAAGCCAATGAAACGAT
Coding sequences of Glyma.10g196700
>Glyma.10g196700.1 sequence-type=CDS polypeptide=Glyma.10g196700.1.p locus=Glyma.10g196700 ID=Glyma.10g196700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCAATTACTCTCGGACGAGAAAAGTCGCTGCATTACTTCAATTGTTGGAATTGAAGGTACAGTGCCTCCAAGTTGTACGGTTGAACAACTTCTACAAGAAGTAGCCGAAGAGGCTGCCAAACAAATTATGGGTGGCCAGCAAGACAGATGGACAACACAAGTTGTATTCACAACTTTGGCGAATACAAAGTATCTCATTGTTGTTGATGGCATCAAAACTTCCCATGTCTTGGATACCTTGAGAGAGACCATACCTGACAAGTCGACAAGAAGCAGATTTCTTCTTACCACTTGCAATGCAAATGTATTGCAACAAGCGGGTACAAGATCCTTTGTTCTTCCTATCCAGTTACTAGACGATGAAAATAGTTGGATTCTGTTTACAAGAATTTTGAGGGACGTTCCCTTAGAACAAACAGATGCTGAAAAAGAAATTGTAAATTGTGGGGGCCTGCCATCGGAAATATTAAAAATGAGCGAGTTGCTTTTACATGAAGATGCCAGAGAGCAGTCCATTATAGGTCAAAACCCTTGGTCTGAAACACTTAACACAGTCTGCATGAACTTACCTTCATACCTGAGGAGATGTTTATTTTATTTCAAGCTATTCCCTGCTGATTTTGGGATTCCAGTAAGAAGATTGATTGTTTTGTGGGTTGCAGAGGGTCTAGTGCATCAAGGGGAAGACCAAGGGCCACCAGAGCTAATTGCAGAAAAGTACTTGGCAGAGTTGATAGATCTGAACATGGTTCAAATTGCCAAGAGAAAGCCCAATGGCAAGGTGAAAACATGTCGTCTCCCTAATCCTTTTCGTGAATTCTTGCTGAATGCAGCAGTACCAACAAATTCCAGAATACGTCAAGTGGCAGATCGTTTTGACGAAAATGATACCTGGCACAGACATATTCATGGCAACACTACTACAAGTGATTCAGCTTCCCTGTTAACCAACTACAAGGATGTTCTCTCCTTCCTGTCCTTTGATGCTCGAGAAGGAAGTAAACCTGGCCAAGATATAAGTAACTTTCTAAACCTGTGCATCTCGAGCAATTGTCTTCTACTACTGCGGGTGCTTGATCTAGAAGGTGTTTACAAGGCCAAATTGCCTAAAAACATTGGAAGACTTACTCGATTGAGGTATCTTGGCCTAAGATGGACTTATGTAGAGTCACTTCCATCATCTATAAGCAGCTTGCTGAAACTCCAGACTCTTGATCTGAAATACACTTACATACATACTCTAACCAGCTCCATCTGGAAGATGGAACTGAGACACTTGTTCTTGAGTGAAACTTATCGCACCAAATTTCCACCCAAGCCAAAAGGTATACGCATAGGTAGTTCTCTATCTGACCTCCAAACATTGTGGGGACTATTTGTAGACGAAGAGACTCCGGTCAAGGGTGGTCTGGACAAATTGGTCAATATCAGAAAATTGGGAATAACATGCCAATCAATGTCAAAAAAGCAAGAGGCAATGGAATCGCAACTTGATGTAGTAGCTGACTGGATTGTGAAATTAGACTACCTTCAATCACTGAGGCTAAAATCAAGAGATGAAGAAGGTCGACCTTGGAATATACACTTGAAGTCTTTGAAAAATCACATTAATCTCACAGACGTGTATTTGCTGGGATGCTTGAGCAGTCCATCCATTTTGAACCAATTGCCCTCAAGCCTTGTTGAACTTACTCTATCACATTCAAAACTAGAGGATGATCCCATGCAAACTTTGAAAGATCTTCCAAATCTTCACTCATTGTCTTTACTTGCAGAATCCTACCTGGGAAAAGATTTGGTTTGCAGTTCTCAAAGCTTTCCTCAGCTTCATGTTTTAAAATTTTGGAAGCTGGAGCAATTAGAGGAATGGAATATAGAGCCAGAAGCACTTCCCTCTCTCAGACAGCTGGAAATCCGATCATGTCCGGGCATGAAAATGCTTCCTGATGGACTAAAGCATGTTAACACTCTCCTTGAGTTGAAATTGACAAACATGCCAACGGAAATCAATACTGACAAGCATTCCATTCCGCCCAAATGTGAAGTCCACAGAGATGATTCTCAGTAG

>Glyma.10g196700.2 sequence-type=CDS polypeptide=Glyma.10g196700.2.p locus=Glyma.10g196700 ID=Glyma.10g196700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCAATTACTCTCGGACGAGAAAAGTCGCTGCATTACTTCAATTGTTGGAATTGAAGGTACAGTGCCTCCAAGTTGTACGGTTGAACAACTTCTACAAGAAGTAGCCGAAGAGGCTGCCAAACAAATTATGGGTGGCCAGCAAGACAGATGGACAACACAAGTTGTATTCACAACTTTGGCGAATACAAAGTATCTCATTGTTGTTGATGGCATCAAAACTTCCCATGTCTTGGATACCTTGAGAGAGACCATACCTGACAAGTCGACAAGAAGCAGATTTCTTCTTACCACTTGCAATGCAAATGTATTGCAACAAGCGGGTACAAGATCCTTTGTTCTTCCTATCCAGTTACTAGACGATGAAAATAGTTGGATTCTGTTTACAAGAATTTTGAGGGACGTTCCCTTAGAACAAACAGATGCTGAAAAAGAAATTGTAAATTGTGGGGGCCTGCCATCGGAAATATTAAAAATGAGCGAGTTGCTTTTACATGAAGATGCCAGAGAGCAGTCCATTATAGGTCAAAACCCTTGGTCTGAAACACTTAACACAGTCTGCATGAACTTACCTTCATACCTGAGGAGATGTTTATTTTATTTCAAGCTATTCCCTGCTGATTTTGGGATTCCAGTAAGAAGATTGATTGTTTTGTGGGTTGCAGAGGGTCTAGTGCATCAAGGGGAAGACCAAGGGCCACCAGAGCTAATTGCAGAAAAGTACTTGGCAGAGTTGATAGATCTGAACATGGTTCAAATTGCCAAGAGAAAGCCCAATGGCAAGGTGAAAACATGTCGTCTCCCTAATCCTTTTCGTGAATTCTTGCTGAATGCAGCAGTACCAACAAATTCCAGAATACGTCAAGTGGCAGATCGTTTTGACGAAAATGATACCTGGCACAGACATATTCATGGCAACACTACTACAAGTGATTCAGCTTCCCTGTTAACCAACTACAAGGATGTTCTCTCCTTCCTGTCCTTTGATGCTCGAGAAGGAAGTAAACCTGGCCAAGATATAAGTAACTTTCTAAACCTGTGCATCTCGAGCAATTGTCTTCTACTACTGCGGGTGCTTGATCTAGAAGGTGTTTACAAGGCCAAATTGCCTAAAAACATTGGAAGACTTACTCGATTGAGGTATCTTGGCCTAAGATGGACTTATGTAGAGTCACTTCCATCATCTATAAGCAGCTTGCTGAAACTCCAGACTCTTGATCTGAAATACACTTACATACATACTCTAACCAGCTCCATCTGGAAGATGGAACTGAGACACTTGTTCTTGAGTGAAACTTATCGCACCAAATTTCCACCCAAGCCAAAAGGTATACGCATAGGTAGTTCTCTATCTGACCTCCAAACATTGTGGGGACTATTTGTAGACGAAGAGACTCCGGTCAAGGGTGGTCTGGACAAATTGGTCAATATCAGAAAATTGGGAATAACATGCCAATCAATGTCAAAAAAGCAAGAGGCAATGGAATCGCAACTTGATGTAGTAGCTGACTGGATTGTGAAATTAGACTACCTTCAATCACTGAGGCTAAAATCAAGAGATGAAGAAGGTCGACCTTGGAATATACACTTGAAGTCTTTGAAAAATCACATTAATCTCACAGACGTGTATTTGCTGGGATGCTTGAGCAGTCCATCCATTTTGAACCAATTGCCCTCAAGCCTTGTTGAACTTACTCTATCACATTCAAAACTAGAGGATGATCCCATGCAAACTTTGAAAGATCTTCCAAATCTTCACTCATTGTCTTTACTTGCAGAATCCTACCTGGGAAAAGATTTGGTTTGCAGTTCTCAAAGCTTTCCTCAGCTTCATGTTTTAAAATTTTGGAAGCTGGAGCAATTAGAGGAATGGAATATAGAGCCAGAAGCACTTCCCTCTCTCAGACAGCTGGAAATCCGATCATGTCCGGGCATGAAAATGCTTCCTGATGGACTAAAGCATGTTAACACTCTCCTTGAGTTGAAATTGACAAACATGCCAACGGAAATCAATACTGACAAGCATTCCATTCCGCCCAAATGTGAAGTCCACAGAGATGATTCTCAGTAG
Predicted protein sequences of Glyma.10g196700
>Glyma.10g196700.1.p sequence-type=predicted peptide transcript=Glyma.10g196700.1 locus=Glyma.10g196700 ID=Glyma.10g196700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQLLSDEKSRCITSIVGIEGTVPPSCTVEQLLQEVAEEAAKQIMGGQQDRWTTQVVFTTLANTKYLIVVDGIKTSHVLDTLRETIPDKSTRSRFLLTTCNANVLQQAGTRSFVLPIQLLDDENSWILFTRILRDVPLEQTDAEKEIVNCGGLPSEILKMSELLLHEDAREQSIIGQNPWSETLNTVCMNLPSYLRRCLFYFKLFPADFGIPVRRLIVLWVAEGLVHQGEDQGPPELIAEKYLAELIDLNMVQIAKRKPNGKVKTCRLPNPFREFLLNAAVPTNSRIRQVADRFDENDTWHRHIHGNTTTSDSASLLTNYKDVLSFLSFDAREGSKPGQDISNFLNLCISSNCLLLLRVLDLEGVYKAKLPKNIGRLTRLRYLGLRWTYVESLPSSISSLLKLQTLDLKYTYIHTLTSSIWKMELRHLFLSETYRTKFPPKPKGIRIGSSLSDLQTLWGLFVDEETPVKGGLDKLVNIRKLGITCQSMSKKQEAMESQLDVVADWIVKLDYLQSLRLKSRDEEGRPWNIHLKSLKNHINLTDVYLLGCLSSPSILNQLPSSLVELTLSHSKLEDDPMQTLKDLPNLHSLSLLAESYLGKDLVCSSQSFPQLHVLKFWKLEQLEEWNIEPEALPSLRQLEIRSCPGMKMLPDGLKHVNTLLELKLTNMPTEINTDKHSIPPKCEVHRDDSQ*

>Glyma.10g196700.2.p sequence-type=predicted peptide transcript=Glyma.10g196700.2 locus=Glyma.10g196700 ID=Glyma.10g196700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQLLSDEKSRCITSIVGIEGTVPPSCTVEQLLQEVAEEAAKQIMGGQQDRWTTQVVFTTLANTKYLIVVDGIKTSHVLDTLRETIPDKSTRSRFLLTTCNANVLQQAGTRSFVLPIQLLDDENSWILFTRILRDVPLEQTDAEKEIVNCGGLPSEILKMSELLLHEDAREQSIIGQNPWSETLNTVCMNLPSYLRRCLFYFKLFPADFGIPVRRLIVLWVAEGLVHQGEDQGPPELIAEKYLAELIDLNMVQIAKRKPNGKVKTCRLPNPFREFLLNAAVPTNSRIRQVADRFDENDTWHRHIHGNTTTSDSASLLTNYKDVLSFLSFDAREGSKPGQDISNFLNLCISSNCLLLLRVLDLEGVYKAKLPKNIGRLTRLRYLGLRWTYVESLPSSISSLLKLQTLDLKYTYIHTLTSSIWKMELRHLFLSETYRTKFPPKPKGIRIGSSLSDLQTLWGLFVDEETPVKGGLDKLVNIRKLGITCQSMSKKQEAMESQLDVVADWIVKLDYLQSLRLKSRDEEGRPWNIHLKSLKNHINLTDVYLLGCLSSPSILNQLPSSLVELTLSHSKLEDDPMQTLKDLPNLHSLSLLAESYLGKDLVCSSQSFPQLHVLKFWKLEQLEEWNIEPEALPSLRQLEIRSCPGMKMLPDGLKHVNTLLELKLTNMPTEINTDKHSIPPKCEVHRDDSQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo