SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g052900

Feature Type:gene_model
Chromosome:Gm09
Start:4652312
stop:4653046
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g052900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23230.1AT Integrase-type DNA-binding superfamily protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
PF00847PFAM AP2 domain JGI N/AIEA

Proteins Associated with Glyma.09g052900
LocusGene SymbolProtein Name
ERF70 Ethylene-responsive factor gene 70

Expression Patterns of Glyma.09g052900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g052900
ParalogEvidenceComments
Glyma.15g159200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g052900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g05850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g052900
>Glyma.09g052900.1 sequence-type=CDS polypeptide=Glyma.09g052900.1.p locus=Glyma.09g052900 ID=Glyma.09g052900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAAGAGAGAGGAGAGGAAGAAGTGAAGTACCGTGGAGTGAGAAAGAGGCCATGGGGTAAGTTCGGAGCAGAGATCAGAGACCCAACAAAACCTACGGGAAGGCAATGGTTAGGGACATTTGACACTGCTGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCCATTGCTTTGAGGGGTGCTCTTGCAATCCTTAATTTTCCTCATGAGTTCCATTTTCATCTCCCTTTTATATTATCAAATTCTTCTACTAAGGGAAATGGAAGTTCTTTTGATAAGGAAGTTATTGAGTTAGAGTATTTGGATGACAAGGTGTTGGAAGAGCTTCTTGAGTTAGAAGAGAAGAGAAGGAATAACGAAGACTAA
Predicted protein sequences of Glyma.09g052900
>Glyma.09g052900.1.p sequence-type=predicted peptide transcript=Glyma.09g052900.1 locus=Glyma.09g052900 ID=Glyma.09g052900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKERGEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIALRGALAILNFPHEFHFHLPFILSNSSTKGNGSSFDKEVIELEYLDDKVLEELLELEEKRRNNED*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo