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Report for Sequence Feature Glyma.08g160500

Feature Type:gene_model
Chromosome:Gm08
Start:12422125
stop:12429152
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g160500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65930.1AT cytosolic NADP+-dependent isocitrate dehydrogenase JGI N/AIEA
GO:0006099GO-bp tricarboxylic acid cycle EnsemblGenomesN/AIEA
GO:0006102GO-bp isocitrate metabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0004450GO-mf isocitrate dehydrogenase (NADP+) activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
KOG1526 KOG NADP-dependent isocitrate dehydrogenase JGI N/AIEA
PTHR11822Panther NADP-SPECIFIC ISOCITRATE DEHYDROGENASE JGI N/AIEA
PF00180PFAM Isocitrate/isopropylmalate dehydrogenase JGI N/AIEA
PWY-6549SoyCyc9 L-glutamine biosynthesis III Plant Metabolic Network ISS
GN7V-41964SoyCyc9-rxn isocitrate dehydrogenase (NADP+) Plant Metabolic Network ISS

Proteins Associated with Glyma.08g160500
LocusGene SymbolProtein Name
IDH1 NADP-dependent isocitrate dehydrogenase

Expression Patterns of Glyma.08g160500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g160500
ParalogEvidenceComments
Glyma.15g266700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g160500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g17080 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g160500
>Glyma.08g160500.1 sequence-type=CDS polypeptide=Glyma.08g160500.1.p locus=Glyma.08g160500 ID=Glyma.08g160500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTTCAGAAGATAAGGGTGGGCAACCCCATCGTCGAAATGGATGGGGATGAAATGACCCGAGTGATTTGGAAACTGATAAAAGATAAGCTTATTTTCCCTTATTTGGAGCTGGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGCGATGCCACTAATGATAGAGTTACTATTGAAAGCGCTGAAGCTACACTCAAGTATAATGTAGCTATCAAATGTGCTACTATAACTCCAGGTACAGTTTTTAGAGAGCCAATTATCTGTAAGAACATTCCTCGTCTTGTTTCAGGATGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGAGACCAATATCGGGCAACTGATACAGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTTTTTGCACCCAGTGGAAATGAAGGCATTAAAGAGCTAGAGGTCTATAACTTTACTGGTGCTGGAGGCATAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTTGCTGAGGCTTCAATGAACTTTGCTTACCAGAAGAAATGGCCTCTCTATCTTAGCACTAAAAATACCATTTTAAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGACACCCAATGGAATCACAAGTTCAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCTTATGCTCTCAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGATTTGGTTCACTTGGCTTGATGACGTCAGTACTGGTTTGCCCAGATGGGAAAACCATTGAAGCAGAGGCAGCCCATGGCACTGTTACCCGTCATTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCGCGAGGTCTTGCACATAGGGCAAAATTGGATGGAAATGCTAGATTGTTGGACTTCACAGAGAAACTGGAAGCAGCTTGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCACTTCTTGTTCATGGACCTAAGGTTTCTAGATCCCAGTATTTGAATACTGAAGAGTTCATTGATGCCGTAGCCGAGGAGCTGCGAACAAGATTATCTTCACAATCGAAGCTGTAA
Predicted protein sequences of Glyma.08g160500
>Glyma.08g160500.1.p sequence-type=predicted peptide transcript=Glyma.08g160500.1 locus=Glyma.08g160500 ID=Glyma.08g160500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFQKIRVGNPIVEMDGDEMTRVIWKLIKDKLIFPYLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFAPSGNEGIKELEVYNFTGAGGIALSMYNTDESIRAFAEASMNFAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWNHKFKAAGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIGTVELGKMTKDLALLVHGPKVSRSQYLNTEEFIDAVAEELRTRLSSQSKL*






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