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Report for Sequence Feature Glyma.08G201000

Feature Type:gene_model
Chromosome:Gm08
Start:16258261
stop:16262687
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08G201000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79730.1AT hydroxyproline-rich glycoprotein family protein JGI N/AIEA
GO:0006368GO-bp transcription elongation from RNA polymerase II promoter EnsemblGenomesN/AIEA
GO:0016570GO-bp histone modification EnsemblGenomesN/AIEA
GO:0016593GO-cc Cdc73/Paf1 complex EnsemblGenomesN/AIEA
KOG2478 KOG Putative RNA polymerase II regulator JGI N/AIEA
PTHR23188Panther FAMILY NOT NAMED JGI N/AIEA
PTHR23188:SF3Panther JGI N/AIEA
PF03985PFAM Paf1 JGI N/AIEA

Expression Patterns of Glyma.08G201000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08G201000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08G201000
ParalogEvidenceComments
Glyma.07g015500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08G201000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g201000 Wm82.a4.v1ISS As supplied by JGI
Glyma08g21490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08G201000
>Glyma.08g201000.1 sequence-type=CDS polypeptide=Glyma.08g201000.1.p locus=Glyma.08g201000 ID=Glyma.08g201000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCTTACAGGCCCTTCCCTCCCCAATCGAGTCAAATTCCAAACCCGATCCCAGGTGGGAATCATCAGTATAATAATAATAATAATCAAAATCAAAATTGGGGTGCTTATGGAGATCCCTCTACTTCTTCATTCCCCCAAATCCCTCCAAATTCCAATTATCATCAAAATCAACATCATGTTCCATATGCACCAGCACCTTCAAATCCCCACCACCCTCCTCACTATCCATATCCACCACCACCGCCGCCGCCGCCGCCACCGGAGGCTTCATACCAGCCGCCGCCGCCACCACCACCACCAGCTCCTATGTATTATCCCTCTAGTAGTCAGTATAGCAACCAGCCACCTCCACCGCCACCGCCCTTGTCGCCACCACCACCACCTCCCCCGGTTTCGCCTCCTCCTCCTCCCCCGGCAACTCAGAACAACAACGAGGAGCGGCGTTTCAAGGAGCCTTCCAAGTCTGGCCGGCGCGAATACGAGCATTCCAATCACGGCATTGCTCACAAACAGCACAAGCAGCAGCAGCCTCCCCTTCCGGTGAAGAAGATGAACAACGGGCCTCCCGGCAGGGCTGAGACCGATGAAGAGAAGAGGTTGAGGAAGAAAAGGGAATTTGAGAAGCAGAGGCAGGAGGAAAAGCATAGGCAGCAGCTGAAGGAGTCCCAGAATACTGTTCTGCAGAAGACTCACCTGTTGTCATCTGGGAAGGGGCATGGCATGATTGCAGGGTCTCGAATGGGTGAAAGGAGATCTACTCCCTTGTTGGGTGCTGAGAGGGTTGAAAATAGGTTGAAGAAGCCCACAACGTTTTTGTGTAAGCTCAAATTTCGAAATGAACTTCCAGATCCAAGTGCTCAACCTAAGCTTATGTCCTTCAAGAAAGATAAAGATCAATATGCAAAATATACAATCACGTCTCTGGAGAAAATGTACAAACCCAAGCTTTTTGTGGAGCCAGATCTAGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTATAATCCTCCCAGGGTCAGACCACCCCTTGCTCCAGAAGATGAAGAATTGTTGCGAGATGATGAAGCTGCTACTCCTATTAAAAAAGATGGCATTAAAAGAAAGGAGAGGCCTACTGATAAAGGTGTAGCATGGCTTGTAAAAACACAATATATTTCTCCTCTAAGCATGGAGTCGACAAAGCAGTCTTTAACTGAGAAACAAGCTAAGGAGCTGAGAGAGATGAAGGGTCGTGGCATTTTGGACAATCTCAACAGTAGGGAAAGACAAATTAGGGAAATCCAAGCATCATTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCATTGCTGCCTGATTTTGATAGGTATGATGATCAGTTTGTTGTTGCTGCATTTGATAATGCTCCCACAGCTGATTCAGAAATGTATGCTAAGATGAACAAATCTGTTCGTGATGCCTTTGAATCAAAGGCAGTTATGAAAAGTTATGTTGCAACGGGTTTGGATCCTGCTAACCCTGAGAAGTTTTTGGCTTATATGGCCCCAGCACCAGGAGAGCTGTCAAAGGATATATATGATGAAAATGAAGATGTCTCGTACTCTTGGATTCGCGAGTATCATTGGGATGTTCGGGGTGATGATGCAGATGATCCCACAACATTCTTAGTTGCATTCGATGAGTCAGAAGCACGCTACTTGCCTCTTCCAACTAAACTTGTTTTAAGAAAAAAGAGGGCAAAAGAGGGAAGATCGGGTGATGAAGTTGAGCAATGTCCAGTACCTGCAAGAGTGACTGTAAGGCGAAGGTCTAGTGTTGCTGCGATTGAGCGGAAGGATTCTGGGGTATATACAAGTTCAAAGGGAAATTCCTTTAAGAGAGTTGGCTTAGAAATGGATGATGGTCTCGAAGACCAACATAGAGGTGCACCACACCAGGACAATTATCAGTCTAGTGGAGCAGAAGATTACATGTCTGATTGA
Predicted protein sequences of Glyma.08G201000
>Glyma.08g201000.1.p sequence-type=predicted peptide transcript=Glyma.08g201000.1 locus=Glyma.08g201000 ID=Glyma.08g201000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASYRPFPPQSSQIPNPIPGGNHQYNNNNNQNQNWGAYGDPSTSSFPQIPPNSNYHQNQHHVPYAPAPSNPHHPPHYPYPPPPPPPPPPEASYQPPPPPPPPAPMYYPSSSQYSNQPPPPPPPLSPPPPPPPVSPPPPPPATQNNNEERRFKEPSKSGRREYEHSNHGIAHKQHKQQQPPLPVKKMNNGPPGRAETDEEKRLRKKREFEKQRQEEKHRQQLKESQNTVLQKTHLLSSGKGHGMIAGSRMGERRSTPLLGAERVENRLKKPTTFLCKLKFRNELPDPSAQPKLMSFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPRVRPPLAPEDEELLRDDEAATPIKKDGIKRKERPTDKGVAWLVKTQYISPLSMESTKQSLTEKQAKELREMKGRGILDNLNSRERQIREIQASFEAAKSDPVHATNKDLYPVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMYAKMNKSVRDAFESKAVMKSYVATGLDPANPEKFLAYMAPAPGELSKDIYDENEDVSYSWIREYHWDVRGDDADDPTTFLVAFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQCPVPARVTVRRRSSVAAIERKDSGVYTSSKGNSFKRVGLEMDDGLEDQHRGAPHQDNYQSSGAEDYMSD*






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