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Report for Sequence Feature Glyma.08G200800

Feature Type:gene_model
Chromosome:Gm08
Start:16246816
stop:16253923
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08G200800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51940.1AT protein kinase family protein / peptidoglycan-binding LysM domain-containing protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0007166GO-bp cell surface receptor signaling pathway EnsemblGenomesN/AIEA
GO:0007178GO-bp transmembrane receptor protein serine/threonine kinase signaling pathway EnsemblGenomesN/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004675GO-mf transmembrane receptor protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF930Panther JGI N/AIEA
PF01476PFAM LysM domain JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA

Expression Patterns of Glyma.08G200800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08G200800 not represented in the dataset
Glyma.08G200800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08G200800
ParalogEvidenceComments
Glyma.07g015300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08G200800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g200800 Wm82.a4.v1ISS As supplied by JGI
Glyma08g21471 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08G200800
>Glyma.08g200800.1 sequence-type=CDS polypeptide=Glyma.08g200800.1.p locus=Glyma.08g200800 ID=Glyma.08g200800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCTTCTGTTGCAAAAACCCCATTGGGGGTTGCTTCTTCTCTTTCTCCTCTTTCAGCTTCACAGCAGCACCTGCTACCCCACAGAACCCATGAACTGTACGGACACAAGCCGTGTTTGCACTTCTTTCATGGCCTTCAAGCCTGGACCGAACCACACACTTGCTCTGATTCAAAGCATGTTTGATGTTTTGCCTGGTGACATCACAGTTGAAGGCACCGGTTGGGGTTACATGTTCATAAGGAAGAACTGTTCTTGTGCTGCTGGCATAAAAAATTACGTGTCCAACACCACTTTCACTGTGAAATCCAATGAGGGGTTGCTGTATGACATGGTGATGGATGCCTATGATGGCCTAGCTTTCCTTCCCAACACAACCAGGATGGCCAGGAATGGTGCTGTTGTGTCACTGACGTTGTTTTGTGGCTGTTCCAGTGGATTATGGAACTATTTGGTCAGTTATGTGATGAGAGATGGAGATAGTGTTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCCCTTGATTCTGTTCCTGGTGATCCTTATCCCCTAAATAATGCTGCTCCACCAGTTCCTGTTCCTTCCCCATCCTTCGATAATTTTTCAGCTGATCAAGTCAATCATAAGGCTCATGTACCCTATGGATGGATCGTTGGGGGTTTAGGAGTTGCGCTTGTTCTAATAATATTAACTGTTATTCTTTGTGTTTGTCTGAGATCATCAAATTGTTTTGCTGATACCAGAACTCATGAGAAAGATGCTGAGGGTAAGGTCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGATAAGAAGCAAACAGATGGTGAATCCAGCAATCACACAATTACCATTCCCAAAGCTTCAACTCTTGGGCCTGACGTATTTGACATGGATAAGCCTGTTGTTTTTACATATGAAGAGATTTTCTCCACAACTGATGGTTTCTCAGATACAAGTCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTCCGTGATCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACAAAAGAGTTTATGTCTGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTGGTATATGAATATGCTCAGAAGGGTTCACTCAAAAGCCATTTGCATGATCCTCAAAATAAGGGCCACTCCCCACTTTCTTGGATCATGAGGGTCCAGATTGCACTTGATGCTGCTAGGGGACTTGAATACATACATGAGCACACAAAAACTCATTATGTTCACCGTGATATCAAGACAAGTAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGAAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATATTTGAGTGATGGTCTTGCGACCACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATCATATCAGGAAAAGATGCCATCATTCGATCTGAAGGCACAATGTCAAAAAATCCTGATAGACGTTCACTGGCATCCATAATGCTGGGAGTTCTTAGGAATTCACCTGATTCTATGAGCATGTCAAGCTTGAGAGAATATATTGATCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGTTGGCCATGTTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTTGTGATATCCCTTTCACAGATTCTGCTATCTTCAGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG
Predicted protein sequences of Glyma.08G200800
>Glyma.08g200800.1.p sequence-type=predicted peptide transcript=Glyma.08g200800.1 locus=Glyma.08g200800 ID=Glyma.08g200800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMLLLQKPHWGLLLLFLLFQLHSSTCYPTEPMNCTDTSRVCTSFMAFKPGPNHTLALIQSMFDVLPGDITVEGTGWGYMFIRKNCSCAAGIKNYVSNTTFTVKSNEGLLYDMVMDAYDGLAFLPNTTRMARNGAVVSLTLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMDSIESVNGIGNPDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPSPSFDNFSADQVNHKAHVPYGWIVGGLGVALVLIILTVILCVCLRSSNCFADTRTHEKDAEGKVSHKFHILRNPSFFCGSGRYICGKHVDKKQTDGESSNHTITIPKASTLGPDVFDMDKPVVFTYEEIFSTTDGFSDTSLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLKSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKDAIIRSEGTMSKNPDRRSLASIMLGVLRNSPDSMSMSSLREYIDPNMMDLYPHDCVFKLAMLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR*






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