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Report for Sequence Feature Glyma.08G200200

Feature Type:gene_model
Chromosome:Gm08
Start:16187816
stop:16191151
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08G200200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25150.1AT HAD superfamily, subfamily IIIB acid phosphatase JGI N/AIEA
GO:0003993GO-mf acid phosphatase activity JGI N/AIEA
PTHR11726Panther 60S RIBOSOMAL PROTEIN L10 JGI N/AIEA
PTHR11726:SF1Panther JGI N/AIEA
PF03767PFAM HAD superfamily, subfamily IIIB (Acid phosphatase) JGI N/AIEA
PWY-6348SoyCyc9 phosphate acquisition Plant Metabolic Network ISS
GN7V-44850SoyCyc9-rxn acid phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.08G200200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08G200200
ParalogEvidenceComments
Glyma.07g014600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08G200200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g200200 Wm82.a4.v1ISS As supplied by JGI
Glyma08g21420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08G200200
>Glyma.08g200200.1 sequence-type=CDS polypeptide=Glyma.08g200200.1.p locus=Glyma.08g200200 ID=Glyma.08g200200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAAGTTAGTAGTAGTGAAGAAAATGAAAGTCCTTGTTTTCTTTGTTGCTATAGTTCTAGCAGCATGGCATTGCCATGGCTCAGACCATGACCATGACCATGGCCACACCTACCAAATTTTCCCTCTGAGAATGAAAACTGGCCATGGTGGCCACTACATTCCGGAGGTATCATGCCAAAGTTGGAGGCTTGGTGTGGAAGCACACAACGTCATTGACTGGAAAACCGTTCCTCAAGATTGCGAGGGATATATTGGGAACTACATGCTTGGCGAACAATATAGATCAGACTCCAAAATAGTTAACCAACAAGCTTATTTCTATGCTAAAACCCTCAATATCACTGCCAAAACCGCATGGGTGTTCGACATAGATGAGACTACACTCTCTAATCTCCCTTACTATGCTGACCATGGATTTGGGGTGGAGTTATATAATGAAACATCGTTTAATAAATGGGTTGACCTTGGCGAGGCACCGGCACTGCCAGAGAGTCTCAAATTGTACAAGAAACTGTTGTCTCTTGGCATCAAGATTGTATTCATCACAGGAAGACCACTGGATCAAAAGGCTGTAACTGCTACCAACTTAAAGCTTGCTGGATATCACACATGGGAAAAGTTAATTACCAAGAATACATCTGAATACCATGGTAAGACAGCAGTTACATACAAATCTACTGAGAGAAAGAAGCTGGAGGAAAAAGGATACAAAATCATTGGAAACATTGGAGACCAATGGAGCGATCTATTAGGAACCAACACAGGCGATAGGACCTTTAAGTTGCCTGATCCCATGTACTACATTAGTTGA
Predicted protein sequences of Glyma.08G200200
>Glyma.08g200200.1.p sequence-type=predicted peptide transcript=Glyma.08g200200.1 locus=Glyma.08g200200 ID=Glyma.08g200200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQKLVVVKKMKVLVFFVAIVLAAWHCHGSDHDHDHGHTYQIFPLRMKTGHGGHYIPEVSCQSWRLGVEAHNVIDWKTVPQDCEGYIGNYMLGEQYRSDSKIVNQQAYFYAKTLNITAKTAWVFDIDETTLSNLPYYADHGFGVELYNETSFNKWVDLGEAPALPESLKLYKKLLSLGIKIVFITGRPLDQKAVTATNLKLAGYHTWEKLITKNTSEYHGKTAVTYKSTERKKLEEKGYKIIGNIGDQWSDLLGTNTGDRTFKLPDPMYYIS*






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