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Report for Sequence Feature Glyma.07G196000

Feature Type:gene_model
Chromosome:Gm07
Start:36452344
stop:36455168
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07G196000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03510.1AT RING membrane-anchor 1 JGI N/AIEA
GO:0030433GO-bp ubiquitin-dependent ERAD pathway EnsemblGenomesN/AIEA
GO:0071712GO-bp ER-associated misfolded protein catabolic process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0036513GO-cc Derlin-1 retrotranslocation complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0044390GO-mf ubiquitin-like protein conjugating enzyme binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG0823 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR12313Panther RNF5 JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.07G196000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07G196000
ParalogEvidenceComments
Glyma.13g179900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07G196000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g196000 Wm82.a4.v1ISS As supplied by JGI
Glyma07g31580 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07G196000
>Glyma.07g196000.2 sequence-type=transcript locus=Glyma.07g196000 ID=Glyma.07g196000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTGTTTTCGTGTGACTGGGGTAAAAAATAAAAACTATATAAACAACGCGCTGCATCAATTCCCTCCGCTCTGATAATAAAGCCACTCGCCGCTCTCTGCACCCTCCTCTCTCTCTCTTTGGTGCTGGACAAGGACAAGTAACCAAAATTCCAAGAAGGGTTCATTAATACATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAAGCAAGTAATTGGATTGTTATTATCTATTGTCCCATTGTATAATTTGTAAAGAAACACGGGTGTAAGCTCTGAGAACGAGATAGATTGAGCAATGTTAGGGTAAAATAACTGGTGTTCTTCAACATTTACTGCAATATATCAGAGCTCATTTTTCAGATTGTCACTCTATATGACTATCGAAGATGTTGCATTGTACTGCACCCTATTCTATGCC
Coding sequences of Glyma.07G196000
>Glyma.07g196000.1 sequence-type=CDS polypeptide=Glyma.07g196000.1.p locus=Glyma.07g196000 ID=Glyma.07g196000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAA

>Glyma.07g196000.2 sequence-type=CDS polypeptide=Glyma.07g196000.2.p locus=Glyma.07g196000 ID=Glyma.07g196000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAA
Predicted protein sequences of Glyma.07G196000
>Glyma.07g196000.1.p sequence-type=predicted peptide transcript=Glyma.07g196000.1 locus=Glyma.07g196000 ID=Glyma.07g196000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALEHYLSQEWKTSPSPSPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMLYARVFGNSENLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF*

>Glyma.07g196000.2.p sequence-type=predicted peptide transcript=Glyma.07g196000.2 locus=Glyma.07g196000 ID=Glyma.07g196000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALEHYLSQEWKTSPSPSPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMLYARVFGNSENLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF*






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