SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.07G195400

Feature Type:gene_model
Chromosome:Gm07
Start:36395763
stop:36399680
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07G195400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47160.1AT RING/U-box superfamily protein JGI N/AIEA
AT3G47160.2AT RING/U-box superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG1039 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
KOG4172 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR15067Panther FAMILY NOT NAMED JGI N/AIEA
PTHR15067:SF7Panther JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.07G195400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07G195400
ParalogEvidenceComments
Glyma.13g180900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07G195400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g195400 Wm82.a4.v1ISS As supplied by JGI
Glyma07g31510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07G195400
>Glyma.07g195400.2 sequence-type=transcript locus=Glyma.07g195400 ID=Glyma.07g195400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTACGCGTGTTCTGACAAGTTCACCGTCTTGGCTTTCAAGAACGGCATAGAAGCAACACGAAGCActctctttctctctcttcactgtgtgactctctctcACACACAAACTAGAGCGAGAAATATTATAGCTCAGGGTTTTGGGGTATCATTATTCAACCATCAACCATTTTCTCTCTTCTTCTTCTCTAGTGAGAAATTTCTCTTTCATTGTGTGTGGTCAGTGAGATGTATGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAACACGCCAATACCCTGGCCTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTCCTTTTCTTGGTACAGTGGACAGATTGCCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGCGGTCATTTATCCCTCTTTGTTGCAACTTGAAAAAGGTGTAACTGATACTGAGGATAAGAAGCAAAAGGCTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATATCACAATCATGCCCATTTTGCCGCGACAGTCTGAAGAGAGTGAACTCAGGTGATCTCTGGGTATTCACCGATAGAAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACACATATGACTCTCACATAAGGTAAGTGATTGCAACAGAACAGATTTTAATGCATGCTGTTGTCTTGGATTGATAGAGCTATAATCCCTTCCACTTAAAGCTAGTCACATTAAAACCCGAACCCGAGTCGGCTAATTGAGTTCGTACTATATATAGAGTTGCAGTACTTGCTTCCCACTTCTGCTGCCAGAAGTATCCAGCCCTGTGTTAATTGTGGGTTGGTGGTGAAGTTGAGATGGTAAATTGTATCTATCTAGCTAGCTCATTTGTATATCCCTGTACAGATCGAATTAATTACTTCTTATTAACAAGAGATTTGCACATTTGGTTCTTGTCATTTAAGTGTGAATCTCTTGAGAAAAAAAACTTTTACTTTTCTTCATCAATGAATGTATTTAACAGAATATATTAGCCTCGTAGGTGCTTTTCCTATGTAGTGTGTTTAGTATCTGTATTCGCTATATTTCCTTAAGGTCCTCTTAATTGTAACTACTATTATGTTTTATATTATTTAAGCACTGTAGTCTATAGTACTGTTT

>Glyma.07g195400.3 sequence-type=transcript locus=Glyma.07g195400 ID=Glyma.07g195400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCCATGTGAGGTTCTTCTGGGGCCTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTCCTTTTCTTGGTACAGTGGACAGATTGCCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAACGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCTCTTTGTTGCAACTTGAAAAAGGTGTAACTGATACTGAGGATAAGAAGCAAAAGGCTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATATCACAATCATGCCCATTTTGCCGCGACAGTCTGAAGAGAGTGAACTCAGGTGATCTCTGGGTATTCACCGATAGAAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACACATATGACTCTCACATAAGGTAAGTGATTGCAACAGAACAGATTTTAATGCATGCTGTTGTCTTGGATTGATAGAGCTATAATCCCTTCCACTTAAAGCTAGTCACATTAAAACCCGAACCCGAGTCGGCTAATTGAGTTCGTACTATATATAGAGTTGCAGTACTTGCTTCCCACTTCTGCTGCCAGAAGTATCCAGCCCTGTGTTAATTGTGGGTTGGTGGTGAAGTTGAGATGGTAAATTGTATCTATCTAGCTAGCTCATTTGTATATCCCTGTACAGATCGAATTAATTACTTCTTATTAACAAGAGATTTGCACATTTGGTTCTTGTCATTTAAGTGTGAATCTCTTGAGAAAAAAAACTTTTACTTTTCTTCATCAATGAATGTATTTAACAGAATATATTAGCCTCGTAGGTGCTTTTCCTATGTAGTGTGTTTAGTATCTGTATTCGCTATATTTCCTTAAGGTCCTCTTAATTGTAACTACTATTATGTTTTATATTATTTAAGCACTGTAGTCTATAGTACTGTTT
Coding sequences of Glyma.07G195400
>Glyma.07g195400.1 sequence-type=CDS polypeptide=Glyma.07g195400.1.p locus=Glyma.07g195400 ID=Glyma.07g195400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAACACGCCAATACCCTGGCCTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTCCTTTTCTTGGTACAGTGGACAGATTGCCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAACGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCTCTTTGTTGCAACTTGAAAAAGGTGTAACTGATACTGAGGATAAGAAGCAAAAGGCTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATATCACAATCATGCCCATTTTGCCGCGACAGTCTGAAGAGAGTGAACTCAGGTGATCTCTGGGTATTCACCGATAGAAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACACATATGACTCTCACATAAGGTAA

>Glyma.07g195400.2 sequence-type=CDS polypeptide=Glyma.07g195400.2.p locus=Glyma.07g195400 ID=Glyma.07g195400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTCCTTTTCTTGGTACAGTGGACAGATTGCCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGCGGTCATTTATCCCTCTTTGTTGCAACTTGAAAAAGGTGTAACTGATACTGAGGATAAGAAGCAAAAGGCTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATATCACAATCATGCCCATTTTGCCGCGACAGTCTGAAGAGAGTGAACTCAGGTGATCTCTGGGTATTCACCGATAGAAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACACATATGACTCTCACATAAGGTAA

>Glyma.07g195400.3 sequence-type=CDS polypeptide=Glyma.07g195400.3.p locus=Glyma.07g195400 ID=Glyma.07g195400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAATGTCATACAGTCCAGCTGCACACCTGTTCCTTTTCTTGGTACAGTGGACAGATTGCCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAACGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCTCTTTGTTGCAACTTGAAAAAGGTGTAACTGATACTGAGGATAAGAAGCAAAAGGCTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATATCACAATCATGCCCATTTTGCCGCGACAGTCTGAAGAGAGTGAACTCAGGTGATCTCTGGGTATTCACCGATAGAAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACACATATGACTCTCACATAAGGTAA
Predicted protein sequences of Glyma.07G195400
>Glyma.07g195400.1.p sequence-type=predicted peptide transcript=Glyma.07g195400.1 locus=Glyma.07g195400 ID=Glyma.07g195400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDTEDKKQKAVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR*

>Glyma.07g195400.2.p sequence-type=predicted peptide transcript=Glyma.07g195400.2 locus=Glyma.07g195400 ID=Glyma.07g195400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSDENVIQSSCTPVPFLGTVDRLPSCWSPWTVKNPNLQAVIYPSLLQLEKGVTDTEDKKQKAVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR*

>Glyma.07g195400.3.p sequence-type=predicted peptide transcript=Glyma.07g195400.3 locus=Glyma.07g195400 ID=Glyma.07g195400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDTEDKKQKAVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo