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Report for Sequence Feature Glyma.05g206400

Feature Type:gene_model
Chromosome:Gm05
Start:38922576
stop:38925697
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g206400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G41190.1AT JGI N/AIEA
GO:0000469GO-bp cleavage involved in rRNA processing EnsemblGenomesN/AIEA
GO:0030490GO-bp maturation of SSU-rRNA EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0030688GO-cc preribosome, small subunit precursor EnsemblGenomesN/AIEA
GO:0004521GO-mf endoribonuclease activity EnsemblGenomesN/AIEA
KOG2463 KOG Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly JGI N/AIEA
PTHR12814Panther RNA-BINDING PROTEIN NOB1 JGI N/AIEA
PF08772PFAM Nin one binding (NOB1) Zn-ribbon like JGI N/AIEA

Expression Patterns of Glyma.05g206400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g206400
ParalogEvidenceComments
Glyma.08g013300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g206400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g37950 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g206400
>Glyma.05g206400.1 sequence-type=CDS polypeptide=Glyma.05g206400.1.p locus=Glyma.05g206400 ID=Glyma.05g206400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAAGCTCCGTCTTCAGTTCCGGCGACAGCATCGTGCTGGAGCAACGTGGTCAAGAAGCAACCACCACCACCACCACCGCAGCAGCACACTGAGCGAGTGTTGGTGGAAACCAGCGAATCCCCCAATGCCATCTCCGTTGCCGTCGTGGACGCCAACGCCGTCATCCAATCCGGCGAAAAGCTCCACGGCCTCGCCGACAAGTTCATCTCCATCCCCGAAGTCATGGAGGAAATCCGCGACCCCGTTTCGCGCCACAAACTCTCTTTCCTCCCCTTCACCATCCAAACCATGGAACCCTCCCCCGAATCCATCAACAAAGTTGTTAAATTTGCTAGGGCTACTGGGGACCTACAAACTCTTTCTGATGTTGATATCAAGCTCATAGCTCTGACTTATACTTTGGAGGCTCAAATTCATGGGACAAAACATCTCAGGGAAGCCCCTCCTCCCGTGCAAATGGTCAATGTAAAGAGGTTGCCTGAGAAGGACTTGCCCGGATGGGGTTCTAATGTCCCCAATTTGGATGAGTGGGAGGCATTGGAACAAACCGAGGACGTGTCCAATTCCAATTCCAGGATCCTTCCTTTGCAGGACCTGAGCTTGAACATTGTTTCTCATGATGAGCATTTTGTGGATGGTTCCGTGGAGCGTGCAAGTGAAGCTGATTCAGGGATTCAGGAGGGAGATCAGAATGGTTCGATGAAGCCTAGGAGATATCTGCCGAAGAAAAAGGAGATAAACATCGAGGGGAAGATGATGGTGGCTGATGGAATTGATGCGTCGCAGGGAGAGGTTGATGATAGTGCTGGTGATTGGATGCCAGCTGTCAGTCGGAGTACTCATAGGAGATATCTAAGAAGGAAAGCTAGACGCGAGTATCATGAGTTGTTGTCAAGTAATCAAGATCAGCAACAGTTGGAAGGAAATGTTGATGGTAGTGTTGGTGAAGATGCTAGTGCTTTAAATCAGCCTGCTCATCACAATGAAGAACAACATATTGAAAATGCTGTGACAGAGGATGATAACGTGGTAAAAGAGAACAAAGACAATGAAAGTATCTATGAAATTATGCAGCAAATGAGGCTGCAAGAAGGTTCACTTGAAGTTCTTGATGAGGAAAGTAAACCAAGTTCATCTCCTGAAGAACTCCAGTCAGACAATGCTGGATTGGTGGAAACCGCATCTGATGGCAATGCAACTGTGGTTAATAAACTATGTGACAGTAGGATAGATACAATTGATGGCCAATCAAATCAACTGGAGATTGCAAGCCAGACAAGTGAAGCTGCTGATTTTTCATATGCAGATGATGATGATAGTGACCAAAGTTGGATGGTTAGGTCTTTGTCTGAATCAAGTGTAGCCTGTATAACTGGTGACTTTGCGATGCAAAATGTTCTTCTACAAATGGGTTTGCGCTTGCTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGATGGATACTCAAGTGTCATGCCTGTAACACTGTTACTGCTGAGATTGGGAGGATTTTTTGTCCCAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCAGTCACTGTTAATGAAAATGGAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAGTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAGGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCAGTGGGAGGAGAAATCCAAATGACAATCACTACTCACGCTCTAAAGCATAA
Predicted protein sequences of Glyma.05g206400
>Glyma.05g206400.1.p sequence-type=predicted peptide transcript=Glyma.05g206400.1 locus=Glyma.05g206400 ID=Glyma.05g206400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEAPSSVPATASCWSNVVKKQPPPPPPQQHTERVLVETSESPNAISVAVVDANAVIQSGEKLHGLADKFISIPEVMEEIRDPVSRHKLSFLPFTIQTMEPSPESINKVVKFARATGDLQTLSDVDIKLIALTYTLEAQIHGTKHLREAPPPVQMVNVKRLPEKDLPGWGSNVPNLDEWEALEQTEDVSNSNSRILPLQDLSLNIVSHDEHFVDGSVERASEADSGIQEGDQNGSMKPRRYLPKKKEINIEGKMMVADGIDASQGEVDDSAGDWMPAVSRSTHRRYLRRKARREYHELLSSNQDQQQLEGNVDGSVGEDASALNQPAHHNEEQHIENAVTEDDNVVKENKDNESIYEIMQQMRLQEGSLEVLDEESKPSSSPEELQSDNAGLVETASDGNATVVNKLCDSRIDTIDGQSNQLEIASQTSEAADFSYADDDDSDQSWMVRSLSESSVACITGDFAMQNVLLQMGLRLLAPGGTQIHQLHRWILKCHACNTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIVLAARRPRVTLRGTKFSLPLPQGGRDAVTKNLILREDQLPQRVLYPKMKKANKQDDDFFTPDSVFSHHIDKKAPFQPPVRKAMAVFSGRRNPNDNHYSRSKA*






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