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Report for Sequence Feature Glyma.05g124000

Feature Type:gene_model
Chromosome:Gm05
Start:31766562
stop:31767866
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g124000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06860.1AT polygalacturonase inhibiting protein 1 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF915Panther JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF08263PFAM Leucine rich repeat N-terminal domain JGI N/AIEA

Proteins Associated with Glyma.05g124000
LocusGene SymbolProtein Name
PGIP1 polygalacturonase inhibitor 1 gene
PGIP2 polygalacturonase inhibitor 2 gene

Expression Patterns of Glyma.05g124000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g124000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g25370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g124000
>Glyma.05g124000.1 sequence-type=CDS polypeptide=Glyma.05g124000.1.p locus=Glyma.05g124000 ID=Glyma.05g124000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTCTTAAGCATTCTTCTACTCATAGTCATGTCCTTCTCTCTCGCACTCTCAGAACTATGCAACCCACAAGACAAACAAACGCTACTCCAAATCAAGAAAGAGCTTGGCAACCCAACCACTCTTTCCTCATGGCACCCAAAGACCGACTGTTGCAACAACAGCTGGGTAGGTGTCTCATGCGACACCGTCACCCCAACATACCGCGTCGACAACCTCGACCTCTCCGAACTTAACCTCCGCAAACCCTACCCTATTCCCCCCTCCGTAGGTAGCCTTCCCTGCCTCAAATTTCTTTACATCACCAACAACCCCAACATCGTTGGCACAATACCCACCACCATCACCAAACTCACCAAGCTTCGTGAGCTCAACATCAGATACACCAATATCTCCGGCCAGATACCCCATTTCTTGTCCCAAATCAAAGCCCTCGGATTCCTCGACCTCTCCAACAACAAACTCTCCGGCAACCTCCCTTCCTGGCTTCCTTCTCTCCCCGACCTTTACGGAATCTCCTTCGACAACAACTACATCTCCGGCCCCATCCCAGACTTGTTCGCTTCCGTCTCGGAGAGGTTCGGGTTTATCTCACTCTCCGGCAACCGCCTCATCGGGAAGATTCCGGCGTCGCTGGGGAAGCCGGACATGAAGATTGTGGACTTGTCCCGGAACATGCTGGAGGGTGATGCGTCGGTGTTGTTTGGGTCGGAGAAACACACAGAGAGGATATATCTGGCAAACAACTTGTTTGCTTTTGATTTGGGAAAAGTAAGGTTGTCGAAGACCTTGGGGTTGTTGGATGTTGGCCATAATCTTATATATGGGACGCTTCCTAAGGGACTTACGTCGCTTAAGGATCTGTATTATTTGGATGTGAGCTACAATAATCTCTGTGGTGAGATTCCACGGGGTGGTAAATTGCAAGAATTTGATGCGTCTTTGTATGCTAATAACAAGTGCTTGTGTGGCTCCCCTCTTCCTAGCTGCAAACGGTTCTAG
Predicted protein sequences of Glyma.05g124000
>Glyma.05g124000.1.p sequence-type=predicted peptide transcript=Glyma.05g124000.1 locus=Glyma.05g124000 ID=Glyma.05g124000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLLSILLLIVMSFSLALSELCNPQDKQTLLQIKKELGNPTTLSSWHPKTDCCNNSWVGVSCDTVTPTYRVDNLDLSELNLRKPYPIPPSVGSLPCLKFLYITNNPNIVGTIPTTITKLTKLRELNIRYTNISGQIPHFLSQIKALGFLDLSNNKLSGNLPSWLPSLPDLYGISFDNNYISGPIPDLFASVSERFGFISLSGNRLIGKIPASLGKPDMKIVDLSRNMLEGDASVLFGSEKHTERIYLANNLFAFDLGKVRLSKTLGLLDVGHNLIYGTLPKGLTSLKDLYYLDVSYNNLCGEIPRGGKLQEFDASLYANNKCLCGSPLPSCKRF*






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