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Report for Sequence Feature Glyma.05g010600

Feature Type:gene_model
Chromosome:Gm05
Start:931676
stop:938586
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g010600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26650.1AT K+ transporter 1 JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0006811GO-bp ion transport JGI N/AIEA
GO:0006813GO-bp potassium ion transport EnsemblGenomesN/AIEA
GO:0034765GO-bp regulation of ion transmembrane transport EnsemblGenomesN/AIEA
GO:0042391GO-bp regulation of membrane potential EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0071805GO-bp potassium ion transmembrane transport EnsemblGenomesN/AIEA
GO:0005887GO-cc integral component of plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005216GO-mf ion channel activity EnsemblGenomesN/AIEA
GO:0005216GO-mf ion channel activity JGI N/AIEA
GO:0005244GO-mf voltage-gated ion channel activity EnsemblGenomesN/AIEA
GO:0005249GO-mf voltage-gated potassium channel activity EnsemblGenomesN/AIEA
GO:0005267GO-mf potassium channel activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0498 KOG K+-channel ERG and related proteins, contain PAS/PAC sensor domain JGI N/AIEA
PTHR10217Panther VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL JGI N/AIEA
PTHR10217:SF6Panther JGI N/AIEA
PF00023PFAM Ankyrin repeat JGI N/AIEA
PF00027PFAM Cyclic nucleotide-binding domain JGI N/AIEA
PF00520PFAM Ion transport protein JGI N/AIEA
PF11834PFAM Domain of unknown function (DUF3354) JGI N/AIEA

Proteins Associated with Glyma.05g010600
LocusGene SymbolProtein Name
AKT1 Potassium channel AKT1-like gene 1
AKT1 K+ Transporter 1

Expression Patterns of Glyma.05g010600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g010600
ParalogEvidenceComments
Glyma.17g118300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g010600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g08230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g010600
>Glyma.05g010600.1 sequence-type=CDS polypeptide=Glyma.05g010600.1.p locus=Glyma.05g010600 ID=Glyma.05g010600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGTGTCCATGTCCGTGTGCGGCCAAGATGAGATTGAGTTGTCAAGAGATGGCAGCCACTACAGTCTCTCAACTGGAATACTACCTTCCCTTGGAGCCAAAAGTAACCGCAGACTCAAGCTCAAACCCTTCATTATATCTCCCTATGACCGCCGTTATAGGATATGGGAAACTTTCCTTGTTATTCTGGTGGTTTACACTGCTTGGGTTTCTCCCTTTGAATTCGGATTCCTGAAGAAACCACAAGCACCCCTTTCCATAACCGATAACATTGTCAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTCGTGGCTTACATTGACAAAAGCACTTATTTGATCGTGGATGACCGAAAACAGATTGCTTGGAAATATGCAAGGACTTGGTTGGCCTTTGATGTTATCTCCATCATTCCCTCAGAGCTTGTACAAAAGATATCACCTTCTCCTCTTCAATCTTATGGGCTATTCAACATGCTTAGGCTTTGGCGTCTTCGAAGAGTTAGTGCCTTGTTTTCTCGGCTTGAGAAGGACAAAAACTATAACTATTTTTGGGTTCGATGCGCAAAGCTCATTGCTGTTACCCTCTTCGCTGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCCAAAAAGACATGGATTGGTGCAACCATGGATAATTTCCTTGAACGCAGCTTGTGGTCAAGATACGTGACATCTATTTATTGGTCCATTACTACCTTAACAACTGTTGGTTATGGAGATTTGCATCCTGTGAATTCAAGGGAGATGATCTTTGACATTTTCTATATGCTCTTTAATCTGGGGTTAACTGCGTATCTGATTGGTAATATGACCAACTTGGTTGTCCATGGCACAAGTCGAACCAGAAAATTTAGGGATACCATACAAGCTGCCTCAAATTTTGCCCAAAGGAACCAATTGCCGCATCGGTTGCAAGACCAAATGCTTGCACACTTGTGTTTGAAGTATAGAACCGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAAGCCATCAGATCGAGCATTTCACATTATCTTTTCTATTCTCTGATTGACAAGGTCTACTTGTTTCATGGAGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCAGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAACTACTAGTTCTTAAAAATGGGGTTGAGCAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAAATTGGCGTGCTTTGTTATAAGCCACAGCTTTTCACAGTTCGAACGAAGCGACTAAGTCAGTTGCTCAGGCTAAACCGTACTTCGTTCTTGAATATTGTTCAGGCCAACGTGGGAGATGGAACCATAATAATGAATAATCTCCTTCAGCATTTGAAAGAGATCAACGATCCAATCATGGAGGGAGTTTTGGTGGATATTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGAGATGACTTGTTGTTACATCAATTACTCAAACGGGGCATGGATCCAAATGAATCCGACAACAATCGAAGGACAGCTTTGCATATAGCGGCATCTCAAGGAAAAGAGAACTGTGTTTCGCTTCTGTTAGATTATGGGGCGGATCCCAACATTAGAGATTTGGAAGGTAATGTGCCACTATGGGAGGCTATAGTGGAAGGACATGAGTCAATGAGCAAGCTGTTATCAGAGAATGGAGCAAACTTGCAATGCGGGGATGTGGGTCAATTTGCATGTAATGCCGTTGAACAAAACAGTCTCAACTTGCTGAAGGAAATAATGCGCTATGGAGGAGATATCACGCTTCCAAACAGCAACACAGGGACCACAGCCTTGCACGTTGCAGTCTCTGAAGGCAACGTTGAGATTGTCAAATTCCTTTTGGATCACGGGGCGAGTATTGACAAGCCAGACAAGCATGGCTGGACCCCAAGAGATCTTGCAGATCAGCAGGCACATACAGAAATCAAAGCCCTTTTTGATTCCACTGGGGAGCCTAAGGTTCAGTCTTCCTTCGCTATTCCCGAGAGGAACAGCAAGATCAGGTACCTTGGTAGGTTCACAAGTGAGCCAACCATGCCATTGCCTCTTGATGGCTCGTTTCATGAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCGGCCGAGGCGTCGGAGCAACAACTACCATAACTCACTCTTTGGGATAATGTCAGCAGTACACAATGGGGAAAAGGACCTGCTTTCAGCTGTTGACATGAATAACAATGCAAGGAATGGTATGAAGAGTAGTAGTGCTAGTAGTAGTGCACTTGGTCCAACTAGAGTTATCATTAGTTGCCCTGAGAAGGGTGAGGTTGTTGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTAGTTGAGATTGGAGCCAAGAAATTTGGTTTCTATCCTAATAAGGTTGTATGCAAAGATGGAGGTGAAATTGAAGATCTGGAGGTGATTAGGGATGGTGACCATCTTGTTTTTCTTGGTGCAAGTGGGGTGCTTGAATCCAATTGTCCAGCTCCAGCACCACTAACCAATGGTGTGCATATATAG
Predicted protein sequences of Glyma.05g010600
>Glyma.05g010600.1.p sequence-type=predicted peptide transcript=Glyma.05g010600.1 locus=Glyma.05g010600 ID=Glyma.05g010600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLVSMSVCGQDEIELSRDGSHYSLSTGILPSLGAKSNRRLKLKPFIISPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQAPLSITDNIVNGFFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYARTWLAFDVISIIPSELVQKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLIAVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLERSLWSRYVTSIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTSFLNIVQANVGDGTIIMNNLLQHLKEINDPIMEGVLVDIENMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASQGKENCVSLLLDYGADPNIRDLEGNVPLWEAIVEGHESMSKLLSENGANLQCGDVGQFACNAVEQNSLNLLKEIMRYGGDITLPNSNTGTTALHVAVSEGNVEIVKFLLDHGASIDKPDKHGWTPRDLADQQAHTEIKALFDSTGEPKVQSSFAIPERNSKIRYLGRFTSEPTMPLPLDGSFHESQSQSQSQSRPRRRSNNYHNSLFGIMSAVHNGEKDLLSAVDMNNNARNGMKSSSASSSALGPTRVIISCPEKGEVVGKLVLLPGSFQELVEIGAKKFGFYPNKVVCKDGGEIEDLEVIRDGDHLVFLGASGVLESNCPAPAPLTNGVHI*






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